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circos安装(2018-07-12)

circos安装(2018-07-12)

作者: 简单点lili | 来源:发表于2018-07-12 21:34 被阅读0次

    官网地址:
    http://circos.ca/guide/
    1下载

    wget -c http://circos.ca/distribution/circos-0.69-6.tgz
    

    2 配置perl模块

    cd bin 
    ./list.modules
    ./test.modules
    
    ./circos -modules | grep "missing"
    missing            Clone
    missing            Config::General
    missing            Font::TTF::Font
    missing            GD
    missing            GD::Polyline
    missing            List::MoreUtils
    missing            Math::Bezier
    missing            Math::Round
    missing            Math::VecStat
    missing            Params::Validate
    missing            Readonly
    missing            Regexp::Common
    missing            SVG
    missing            Set::IntSpan
    missing            Statistics::Basic
    missing            Text::Format
    
    #写一个cpan的脚本
    ./circos -modules | grep "missing" |awk '{print "cpan" $2}' >cpan.sh
    

    2.安装所需要的模块

     perl -MCPAN -e shell
     >capn[1]:install Config::General
     >capn[2]:install ...
    
    问题界面.png GD.png

    这两个missing的文件需要进一步解决

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