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str(cellchat.E13)2结构有多长?一篇简书装不下

str(cellchat.E13)2结构有多长?一篇简书装不下

作者: Seurat_Satija | 来源:发表于2021-04-22 13:11 被阅读0次
.. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC4" "GAS6_AXL" "TGFB1_TGFBR1_TGFBR2" "IGF1_IGF1R" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc4" "Gas6  - Axl" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Igf1  - Igf1r" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "GAS" "TGFb" "IGF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Gas6" "Tgfb1" "Igf1" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc4" "Axl" "TGFbR1_R2" "Igf1r" ...
 .. .. .. .. ..$ prob              : num [1:835] 1.17e-05 4.34e-06 7.73e-07 7.06e-07 6.87e-07 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0.29 1 ...
 .. .. .. ..$ Basal   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 666 799 494 808 609 608 677 671 679 664 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC4" "GAS6_AXL" "IGF1_IGF1R" "PROS1_AXL" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc4" "Gas6  - Axl" "Igf1  - Igf1r" "Pros1  - Axl" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "GAS" "IGF" "PROS" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Gas6" "Igf1" "Pros1" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc4" "Axl" "Igf1r" "Axl" ...
 .. .. .. .. ..$ prob              : num [1:835] 1.12e-05 4.64e-06 4.86e-07 8.88e-08 3.91e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0.42 1 1 1 ...
 .. .. .. ..$ Spinious:'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 799 801 808 809 609 608 666 677 494 671 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "GAS6_AXL" "GAS6_TYRO3" "PROS1_AXL" "PROS1_TYRO3" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Gas6  - Axl" "Gas6  - Tyro3" "Pros1  - Axl" "Pros1  - Tyro3" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "GAS" "GAS" "PROS" "PROS" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Gas6" "Gas6" "Pros1" "Pros1" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Axl" "Tyro3" "Axl" "Tyro3" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.99e-07 3.93e-07 7.60e-09 7.48e-09 6.73e-09 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0.45 0.49 0.96 1 ...
 .. .. ..$ Immune  :List of 11
 .. .. .. ..$ FIB-A   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 1 608 609 671 664 679 670 665 674 675 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "TGFB1_TGFBR1_TGFBR2" "IL34_CSF1R" "CSF1_CSF1R" "MDK_NCL" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Tgfb1 - (Tgfbr1+Tgfbr2)" "Il34  - Csf1r" "Csf1  - Csf1r" "Mdk  - Ncl" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "TGFb" "CSF" "CSF" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Tgfb1" "Il34" "Csf1" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "TGFbR1_R2" "Csf1r" "Csf1r" "Ncl" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.26e-06 1.27e-10 1.27e-10 8.75e-05 1.94e-05 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0.94 0.94 1 1 1 1 1 1 1 ...
 .. .. .. ..$ FIB-B   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 1 608 609 671 664 665 679 670 674 675 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "TGFB1_TGFBR1_TGFBR2" "IL34_CSF1R" "CSF1_CSF1R" "MDK_NCL" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Tgfb1 - (Tgfbr1+Tgfbr2)" "Il34  - Csf1r" "Csf1  - Csf1r" "Mdk  - Ncl" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "TGFb" "CSF" "CSF" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Tgfb1" "Il34" "Csf1" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "TGFbR1_R2" "Csf1r" "Csf1r" "Ncl" ...
 .. .. .. .. ..$ prob              : num [1:835] 8.08e-07 3.94e-11 3.94e-11 4.19e-05 9.22e-06 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0.97 0.97 1 1 1 1 1 1 1 ...
 .. .. .. ..$ FIB-P   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 1 608 609 671 664 665 679 670 674 675 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "TGFB1_TGFBR1_TGFBR2" "IL34_CSF1R" "CSF1_CSF1R" "MDK_NCL" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Tgfb1 - (Tgfbr1+Tgfbr2)" "Il34  - Csf1r" "Csf1  - Csf1r" "Mdk  - Ncl" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "TGFb" "CSF" "CSF" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Tgfb1" "Il34" "Csf1" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "TGFbR1_R2" "Csf1r" "Csf1r" "Ncl" ...
 .. .. .. .. ..$ prob              : num [1:835] 1.45e-06 6.43e-11 6.43e-11 5.58e-05 1.24e-05 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0.95 0.95 1 1 1 1 1 1 1 ...
 .. .. .. ..$ MYL     :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 1 806 669 835 583 668 608 609 582 666 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "TGFB1_TGFBR1_TGFBR2" "LGALS9_CD45" "MDK_ITGA6_ITGB1" "LGALS9_CD44" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Tgfb1 - (Tgfbr1+Tgfbr2)" "Lgals9  - Cd45" "Mdk  - (Itga6+Itgb1)" "Lgals9  - Cd44" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "TGFb" "GALECTIN" "MK" "GALECTIN" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Tgfb1" "Lgals9" "Mdk" "Lgals9" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "TGFbR1_R2" "Ptprc" "ITGA6_ITGB1" "Cd44" ...
 .. .. .. .. ..$ prob              : num [1:835] 9.69e-07 9.13e-07 2.50e-07 2.30e-07 1.80e-07 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0 0.31 ...
 .. .. .. ..$ Immune  :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 737 668 835 806 1 582 495 608 609 671 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "KITL_KIT" "MDK_ITGA4_ITGB1" "LGALS9_CD44" "LGALS9_CD45" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Kitl  - Kit" "Mdk  - (Itga4+Itgb1)" "Lgals9  - Cd44" "Lgals9  - Cd45" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "KIT" "MK" "GALECTIN" "GALECTIN" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Kitl" "Mdk" "Lgals9" "Lgals9" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Kit" "ITGA4_ITGB1" "Cd44" "Ptprc" ...
 .. .. .. .. ..$ prob              : num [1:835] 4.12e-07 1.85e-07 9.16e-08 7.51e-08 6.81e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0.96 0.97 0.97 1 ...
 .. .. .. ..$ ENDO    :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 1 669 737 582 495 496 671 679 664 674 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "TGFB1_TGFBR1_TGFBR2" "MDK_ITGA6_ITGB1" "KITL_KIT" "TSLP_IL7R_CRLF2" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Tgfb1 - (Tgfbr1+Tgfbr2)" "Mdk  - (Itga6+Itgb1)" "Kitl  - Kit" "Tslp  - (Il7r+Crlf2)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "TGFb" "MK" "KIT" "IL2" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Tgfb1" "Mdk" "Kitl" "Tslp" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "TGFbR1_R2" "ITGA6_ITGB1" "Kit" "IL7R_CRLF2" ...
 .. .. .. .. ..$ prob              : num [1:835] 5.55e-07 4.45e-07 2.43e-08 1.36e-10 2.54e-09 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0.9 0.99 1 1 1 1 ...
 .. .. .. ..$ Muscle  :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 1 668 835 608 609 671 679 664 665 674 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "TGFB1_TGFBR1_TGFBR2" "MDK_ITGA4_ITGB1" "LGALS9_CD44" "IL34_CSF1R" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Tgfb1 - (Tgfbr1+Tgfbr2)" "Mdk  - (Itga4+Itgb1)" "Lgals9  - Cd44" "Il34  - Csf1r" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "TGFb" "MK" "GALECTIN" "CSF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Tgfb1" "Mdk" "Lgals9" "Il34" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "TGFbR1_R2" "ITGA4_ITGB1" "Cd44" "Csf1r" ...
 .. .. .. .. ..$ prob              : num [1:835] 1.78e-06 9.79e-07 6.55e-07 1.35e-11 1.35e-11 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0.98 0.98 1 1 1 1 1 ...
 .. .. .. ..$ MELA    :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 669 1 667 668 673 737 676 671 679 664 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_ITGA6_ITGB1" "TGFB1_TGFBR1_TGFBR2" "MDK_PTPRZ1" "MDK_ITGA4_ITGB1" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - (Itga6+Itgb1)" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Mdk  - Ptprz1" "Mdk  - (Itga4+Itgb1)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "TGFb" "MK" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Tgfb1" "Mdk" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "ITGA6_ITGB1" "TGFbR1_R2" "Ptprz1" "ITGA4_ITGB1" ...
 .. .. .. .. ..$ prob              : num [1:835] 2.30e-06 1.52e-06 1.33e-06 6.81e-07 1.66e-07 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 1 1 1 ...
 .. .. .. ..$ Basal-P :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 666 669 1 737 677 608 609 671 664 679 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC4" "MDK_ITGA6_ITGB1" "TGFB1_TGFBR1_TGFBR2" "KITL_KIT" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc4" "Mdk  - (Itga6+Itgb1)" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Kitl  - Kit" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "MK" "TGFb" "KIT" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Mdk" "Tgfb1" "Kitl" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc4" "ITGA6_ITGB1" "TGFbR1_R2" "Kit" ...
 .. .. .. .. ..$ prob              : num [1:835] 5.40e-06 3.18e-07 2.98e-07 1.28e-07 6.77e-07 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0.39 0.95 0.95 1 1 1 ...
 .. .. .. ..$ Basal   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 666 737 677 671 664 679 665 674 675 495 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC4" "KITL_KIT" "PTN_SDC4" "MDK_NCL" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc4" "Kitl  - Kit" "Ptn  - Sdc4" "Mdk  - Ncl" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "KIT" "PTN" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Kitl" "Ptn" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc4" "Kit" "Sdc4" "Ncl" ...
 .. .. .. .. ..$ prob              : num [1:835] 5.19e-06 1.42e-07 6.49e-07 3.60e-05 6.75e-06 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0.42 1 1 1 1 1 1 1 ...
 .. .. .. ..$ Spinious:'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 666 677 671 664 679 674 496 495 608 609 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC4" "PTN_SDC4" "MDK_NCL" "MDK_SDC1" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc4" "Ptn  - Sdc4" "Mdk  - Ncl" "Mdk  - Sdc1" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "PTN" "MK" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Ptn" "Mdk" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc4" "Sdc4" "Ncl" "Sdc1" ...
 .. .. .. .. ..$ prob              : num [1:835] 2.15e-07 2.66e-08 5.90e-06 2.24e-06 7.78e-07 ...
 .. .. .. .. ..$ pval              : num [1:835] 0.45 0.51 1 1 1 1 1 1 1 1 ...
 .. .. ..$ ENDO    :List of 11
 .. .. .. ..$ FIB-A   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 496 1 495 494 749 671 664 679 670 665 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "IGF2_IGF2R" "TGFB1_TGFBR1_TGFBR2" "IGF2_IGF1R" "IGF1_IGF1R" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Igf2  - Igf2r" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Igf2  - Igf1r" "Igf1  - Igf1r" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "IGF" "TGFb" "IGF" "IGF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Igf2" "Tgfb1" "Igf2" "Igf1" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Igf2r" "TGFbR1_R2" "Igf1r" "Igf1r" ...
 .. .. .. .. ..$ prob              : num [1:835] 8.36e-06 2.27e-06 2.08e-06 1.40e-07 2.31e-06 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0.57 0.86 1 1 1 1 1 ...
 .. .. .. ..$ FIB-B   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 749 1 496 671 664 665 679 670 674 675 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "SEMA3A_NRP1_PLXNA2" "TGFB1_TGFBR1_TGFBR2" "IGF2_IGF2R" "MDK_NCL" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Sema3a  - (Nrp1+Plxna2)" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Igf2  - Igf2r" "Mdk  - Ncl" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "SEMA3" "TGFb" "IGF" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Sema3a" "Tgfb1" "Igf2" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "NRP1_PLXNA2" "TGFbR1_R2" "Igf2r" "Ncl" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.68e-06 5.63e-07 5.95e-07 5.52e-05 1.23e-05 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0.44 1 1 1 1 1 1 1 ...
 .. .. .. ..$ FIB-P   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 749 496 495 1 494 671 664 679 665 670 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "SEMA3A_NRP1_PLXNA2" "IGF2_IGF2R" "IGF2_IGF1R" "TGFB1_TGFBR1_TGFBR2" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Sema3a  - (Nrp1+Plxna2)" "Igf2  - Igf2r" "Igf2  - Igf1r" "Tgfb1 - (Tgfbr1+Tgfbr2)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "SEMA3" "IGF" "IGF" "TGFb" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Sema3a" "Igf2" "Igf2" "Tgfb1" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "NRP1_PLXNA2" "Igf2r" "Igf1r" "TGFbR1_R2" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.31e-06 1.62e-06 1.22e-06 1.01e-06 8.25e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0.39 1 1 1 1 1 ...
 .. .. .. ..$ MYL     :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 1 669 668 608 609 582 749 666 677 495 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "TGFB1_TGFBR1_TGFBR2" "MDK_ITGA6_ITGB1" "MDK_ITGA4_ITGB1" "IL34_CSF1R" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Tgfb1 - (Tgfbr1+Tgfbr2)" "Mdk  - (Itga6+Itgb1)" "Mdk  - (Itga4+Itgb1)" "Il34  - Csf1r" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "TGFb" "MK" "MK" "CSF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Tgfb1" "Mdk" "Mdk" "Il34" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "TGFbR1_R2" "ITGA6_ITGB1" "ITGA4_ITGB1" "Csf1r" ...
 .. .. .. .. ..$ prob              : num [1:835] 6.76e-07 3.33e-07 1.63e-07 2.80e-09 2.80e-09 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0.06 0.31 0.31 0.76 ...
 .. .. .. ..$ Immune  :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 668 495 737 1 582 494 671 679 608 609 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_ITGA4_ITGB1" "IGF2_IGF1R" "KITL_KIT" "TGFB1_TGFBR1_TGFBR2" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - (Itga4+Itgb1)" "Igf2  - Igf1r" "Kitl  - Kit" "Tgfb1 - (Tgfbr1+Tgfbr2)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "IGF" "KIT" "TGFb" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Igf2" "Kitl" "Tgfb1" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "ITGA4_ITGB1" "Igf1r" "Kit" "TGFbR1_R2" ...
 .. .. .. .. ..$ prob              : num [1:835] 2.47e-07 8.72e-08 7.84e-08 4.74e-08 1.39e-10 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0.03 1 1 1 1 ...
 .. .. .. ..$ ENDO    :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 669 1 496 502 495 737 582 494 749 671 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_ITGA6_ITGB1" "TGFB1_TGFBR1_TGFBR2" "IGF2_IGF2R" "APLN_APLNR" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - (Itga6+Itgb1)" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Igf2  - Igf2r" "Apln  - Aplnr" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "TGFb" "IGF" "APELIN" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Tgfb1" "Igf2" "Apln" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "ITGA6_ITGB1" "TGFbR1_R2" "Igf2r" "Aplnr" ...
 .. .. .. .. ..$ prob              : num [1:835] 5.92e-07 3.87e-07 7.85e-08 6.90e-08 6.84e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0.13 0.34 1 ...
 .. .. .. ..$ Muscle  :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 668 1 496 495 494 671 679 664 665 674 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_ITGA4_ITGB1" "TGFB1_TGFBR1_TGFBR2" "IGF2_IGF2R" "IGF2_IGF1R" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - (Itga4+Itgb1)" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Igf2  - Igf2r" "Igf2  - Igf1r" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "TGFb" "IGF" "IGF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Tgfb1" "Igf2" "Igf2" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "ITGA4_ITGB1" "TGFbR1_R2" "Igf2r" "Igf1r" ...
 .. .. .. .. ..$ prob              : num [1:835] 1.31e-06 1.24e-06 1.08e-06 6.23e-07 4.23e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0.06 1 1 1 1 1 ...
 .. .. .. ..$ MELA    :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 669 667 1 668 495 673 676 737 494 749 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_ITGA6_ITGB1" "MDK_PTPRZ1" "TGFB1_TGFBR1_TGFBR2" "MDK_ITGA4_ITGB1" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - (Itga6+Itgb1)" "Mdk  - Ptprz1" "Tgfb1 - (Tgfbr1+Tgfbr2)" "Mdk  - (Itga4+Itgb1)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "MK" "TGFb" "MK" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Mdk" "Tgfb1" "Mdk" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "ITGA6_ITGB1" "Ptprz1" "TGFbR1_R2" "ITGA4_ITGB1" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.06e-06 1.77e-06 1.06e-06 9.08e-07 3.09e-07 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0.08 0.31 ...
 .. .. .. ..$ Basal-P :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 666 495 669 1 737 494 677 671 679 664 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC4" "IGF2_IGF1R" "MDK_ITGA6_ITGB1" "TGFB1_TGFBR1_TGFBR2" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc4" "Igf2  - Igf1r" "Mdk  - (Itga6+Itgb1)" "Tgfb1 - (Tgfbr1+Tgfbr2)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "IGF" "MK" "TGFb" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Igf2" "Mdk" "Tgfb1" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc4" "Igf1r" "ITGA6_ITGB1" "TGFbR1_R2" ...
 .. .. .. .. ..$ prob              : num [1:835] 7.18e-06 6.52e-07 4.25e-07 2.08e-07 2.43e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0.06 0.36 1 1 1 ...
 .. .. .. ..$ Basal   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 666 495 737 677 494 671 664 679 665 674 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC4" "IGF2_IGF1R" "KITL_KIT" "PTN_SDC4" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc4" "Igf2  - Igf1r" "Kitl  - Kit" "Ptn  - Sdc4" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "IGF" "KIT" "PTN" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Igf2" "Kitl" "Ptn" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc4" "Igf1r" "Kit" "Sdc4" ...
 .. .. .. .. ..$ prob              : num [1:835] 6.90e-06 4.49e-07 2.69e-08 1.01e-06 3.02e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0.42 0.85 1 1 1 1 1 ...
 .. .. .. ..$ Spinious:'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 496 666 677 495 494 671 664 679 674 608 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "IGF2_IGF2R" "MDK_SDC4" "PTN_SDC4" "IGF2_IGF1R" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Igf2  - Igf2r" "Mdk  - Sdc4" "Ptn  - Sdc4" "Igf2  - Igf1r" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "IGF" "MK" "PTN" "IGF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Igf2" "Mdk" "Ptn" "Igf2" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Igf2r" "Sdc4" "Sdc4" "Igf1r" ...
 .. .. .. .. ..$ prob              : num [1:835] 8.93e-08 2.86e-07 4.16e-08 7.68e-09 5.15e-10 ...
 .. .. .. .. ..$ pval              : num [1:835] 0.07 0.45 0.51 0.99 0.99 1 1 1 1 1 ...
 .. .. ..$ Muscle  :List of 11
 .. .. .. ..$ FIB-A   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 496 462 481 480 2 484 3 463 495 671 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "IGF2_IGF2R" "FGF9_FGFR1" "PDGFA_PDGFRB" "PDGFA_PDGFRA" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Igf2  - Igf2r" "Fgf9  - Fgfr1" "Pdgfa  - Pdgfrb" "Pdgfa  - Pdgfra" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "IGF" "FGF" "PDGF" "PDGF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Igf2" "Fgf9" "Pdgfa" "Pdgfa" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Igf2r" "Fgfr1" "Pdgfrb" "Pdgfra" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.13e-05 2.89e-05 2.71e-05 2.49e-05 1.19e-05 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0.99 1 ...
 .. .. .. ..$ FIB-B   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 665 675 480 484 462 481 2 3 463 749 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC2" "PTN_SDC2" "PDGFA_PDGFRA" "PDGFC_PDGFRA" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc2" "Ptn  - Sdc2" "Pdgfa  - Pdgfra" "Pdgfc  - Pdgfra" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "PTN" "PDGF" "PDGF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Ptn" "Pdgfa" "Pdgfc" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc2" "Sdc2" "Pdgfra" "Pdgfra" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.07e-04 2.19e-04 3.85e-05 1.73e-05 1.51e-05 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0 0.07 ...
 .. .. .. ..$ FIB-P   :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 665 675 480 484 462 481 2 3 463 496 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_SDC2" "PTN_SDC2" "PDGFA_PDGFRA" "PDGFC_PDGFRA" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Sdc2" "Ptn  - Sdc2" "Pdgfa  - Pdgfra" "Pdgfc  - Pdgfra" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "PTN" "PDGF" "PDGF" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Ptn" "Pdgfa" "Pdgfc" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Sdc2" "Sdc2" "Pdgfra" "Pdgfra" ...
 .. .. .. .. ..$ prob              : num [1:835] 2.93e-04 2.08e-04 5.49e-05 2.47e-05 1.94e-05 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0 0.89 ...
 .. .. .. ..$ MYL     :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 670 669 668 2 691 3 481 608 609 463 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_LRP1" "MDK_ITGA6_ITGB1" "MDK_ITGA4_ITGB1" "TGFB2_TGFBR1_TGFBR2" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - Lrp1" "Mdk  - (Itga6+Itgb1)" "Mdk  - (Itga4+Itgb1)" "Tgfb2  - (Tgfbr1+Tgfbr2)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "MK" "MK" "TGFb" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Mdk" "Mdk" "Tgfb2" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "Lrp1" "ITGA6_ITGB1" "ITGA4_ITGB1" "TGFbR1_R2" ...
 .. .. .. .. ..$ prob              : num [1:835] 3.26e-05 9.34e-06 4.58e-06 3.55e-06 3.20e-06 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0 0 ...
 .. .. .. ..$ Immune  :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 668 481 495 2 3 463 494 608 609 671 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_ITGA4_ITGB1" "PDGFA_PDGFRB" "IGF2_IGF1R" "TGFB2_TGFBR1_TGFBR2" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - (Itga4+Itgb1)" "Pdgfa  - Pdgfrb" "Igf2  - Igf1r" "Tgfb2  - (Tgfbr1+Tgfbr2)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "PDGF" "IGF" "TGFb" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Pdgfa" "Igf2" "Tgfb2" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "ITGA4_ITGB1" "Pdgfrb" "Igf1r" "TGFbR1_R2" ...
 .. .. .. .. ..$ prob              : num [1:835] 6.87e-06 5.15e-07 3.24e-07 2.48e-07 1.95e-08 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0.9 0.98 0.98 1 ...
 .. .. .. ..$ ENDO    :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 669 2 488 3 645 462 491 463 495 496 ...
 .. .. .. .. ..$ interaction_name  : chr [1:835] "MDK_ITGA6_ITGB1" "TGFB2_TGFBR1_TGFBR2" "VEGFB_VEGFR1" "TGFB3_TGFBR1_TGFBR2" ...
 .. .. .. .. ..$ interaction_name_2: chr [1:835] "Mdk  - (Itga6+Itgb1)" "Tgfb2  - (Tgfbr1+Tgfbr2)" "Vegfb  - Vegfr1" "Tgfb3  - (Tgfbr1+Tgfbr2)" ...
 .. .. .. .. ..$ pathway_name      : chr [1:835] "MK" "TGFb" "VEGF" "TGFb" ...
 .. .. .. .. ..$ ligand            : chr [1:835] "Mdk" "Tgfb2" "Vegfb" "Tgfb3" ...
 .. .. .. .. ..$ receptor          : chr [1:835] "ITGA6_ITGB1" "TGFbR1_R2" "Flt1" "TGFbR1_R2" ...
 .. .. .. .. ..$ prob              : num [1:835] 1.62e-05 2.04e-06 2.49e-07 1.61e-07 1.09e-07 ...
 .. .. .. .. ..$ pval              : num [1:835] 0 0 0 0 0 0 0 0 0.21 0.48 ...
 .. .. .. ..$ Muscle  :'data.frame':   835 obs. of  8 variables:
 .. .. .. .. ..$ pathway_index     : int [1:835] 668 2 496 465 495 462 3 463 481 671 ...

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