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VASP 的光学性质计算及 vaspkit 的安装与使用

VASP 的光学性质计算及 vaspkit 的安装与使用

作者: chempeng | 来源:发表于2017-04-06 20:54 被阅读6622次

    使用的软件:VASP, Origin, SshClient, vaspkit.0.51


    一 光学性质计算

    在完成结构优化和静态计算后,拷贝 scf 文件夹为 optic

    cp -rf scf optic
    

    编辑 optic 文件夹下 INCAR

    INCAR

    SYSTEM=x
    ISTART=0
    ENCUT=350
    EDIFF=1E-5
    IBRION=-1 # change
    POTIM=0.25
    NSW=0 # change
    EDIFFG=-1E-2
    ISMEAR=0
    SIGMA=0.05
    PREC=ACCURATE
    ISIF=2
    NPAR=1 # change 4 to 1
    #LWAVE=FALSE
    #LCHARG=FALSE
    LREAL=Auto
    #IALGO=48
    ISYM=0
    NBANDS=x # add
    LOPTICS=.TRUE. # add
    
    • 注:NBANDS=x x 为 OUTCAT 中 NBANDS*2, 可使用 grep 命令查询
    grep NBANDS OUTCAR
    

    提交作业,计算完成后,可查看 OUTCAR 文件,有计算得出介电常数 (Dielectric constant) 的实部和虚部。

      frequency dependent IMAGINARY DIELECTRIC FUNCTION (independent particle, no local field effects)
         E(ev)      X         Y         Z        XY        YZ        ZX
    
      frequency dependent      REAL DIELECTRIC FUNCTION (independent particle, no local field effects)
         E(ev)      X         Y         Z        XY        YZ        ZX
    

    使用 vaspkit 程序对计算结果进行处理。

    二 vaspkit 的安装与使用

    安装 Installation

    使用 SshClient 将已下载的 vaspkit 导入 linux 服务器,安装步骤:

    tar -zvxf vaspkit.*.tar.gz
    cd vaspkit.*/src
    modify the Makefile file based on your machine environment;
    make
    
    • Note that the formats of POSCAR, CONCAR and CHGCAR files in VASP.5.x are slightly different from those in VASP.4.x. Please set the vasp5=.false. in the src/module.f90 file if you use VASP.4.x

    设置环境变量

    vi ~/.bashrc
    alias opt="~/software/vaspkit.0.51/examples/optic/optics.sh"
    alias kit="~/software/vaspkit.0.51/src/vaspkit"
    source ~/.bashrc
    
    • You need to preparethe REAL.IN and IMAG.IN files which include the real and imaginary parts of frequencydependent complex dielectric function. There is a bash script optics.sh as a reference in the vaspkit.*/examples/optic/ could help you to prepare the real.in and imag.in files.

    光学数据处理

    输入命令opt产生 REAL.INIMAG.IN 文件,依次输入命令kit51,屏幕显示如下

     +---------------------------------------------------+
     |       VASPKIT Version: 0.51 (10 Oct. 2016)        |
     |    A Postprocessing Toolkit For VASP.5.x Code     |
     |    Developed By Vei WANG (wangvei@icloud.com)     |
     +---------------------------------------------------+
    
     =============== Structural Options ==================
     2)  Elastic Constant Calculator
     3)  Structure Converting  4) Supercell Building
     5)  EOS Fitting           6) Symmetry Toolkit
     7)  K-Mesh Generating
     8)  Band-Structure Path Generating (experimental)
    
     =============== Electronic Options ==================
     11) Total DOS            12) Projected DOS
     13) l-m Decomposed DOS
     21) Band-Structure       22) Projected Band-Structure
     23) 3D Band-Structure for Two-Dimensional Materials
     24) One Specific Band-Structure
    
     ======== Charge Density & Potential Options =========
     31) CHG Density          32) Spin Density
     33) Spin-Up & -Down Density
     34) CHG Difference       35) Spin Density Difference
     41) Planar-Average CHG   42) Planar-Average POT
    
     =============== Optical Options =====================
     51) Linear Optics
    
     ================ Misc Utilities =====================
     91) Semiconductor Calculator
     92) VASP2BoltzTraP
    
     0)  Quit
     ------------>>
    51
     +---------------------------------------------------+
     |    Please prepared IMAG.in and REAL.in files      |
     |               before runing optics                |
     |...................................................|
     |  Calculate absorb,refractive,energylossspectrum,  |
     |        extinctionr and reflectivity (in eV).      |
     +---------------------------------------------------+
    
     -->> (1) Reading IMAG.in and REAL.in Files...
     -->> (2) Written Optical Files Succesfully!
     +---------------------------------------------------+
     |                   * DISCLAIMER *                  |
     |    CANNOT Guarantee Reliability of VASPKIT Code   |
     |  CHECK Your Results for Consistency If Necessary  |
     |               (^.^) GOOD LUCK (^.^)               |
     +---------------------------------------------------+
    

    输出文件 ABSORB.dat,REFRACTIVE.dat,REFLECTIVITY.dat,EXTINCTION.dat 和 ENERGYLOSSSPECTRUM.dat,依次为 absorption coefficient, refractive coefficient, reflectivity coefficient, extinction coefficient and energy-loss function。导出使用 Origin 作图即可。


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