小提琴图与箱形图相似，不同之处在于它也显示了数据在不同值处的概率密度

带有误差线的小提琴图

library(ggpubr)
ggviolin(data, x=, y=,
  combine = FALSE,
  merge = FALSE,
  color = "black",
  fill = "white",
  palette = NULL,
  alpha = 1,
  title = NULL,
  xlab = NULL,
  ylab = NULL,
  facet.by = NULL,
  panel.labs = NULL,
  short.panel.labs = TRUE,
  linetype = "solid",
  trim = FALSE,
  size = NULL,
  width = 1,
  draw_quantiles = NULL,
  select = NULL,
  remove = NULL,
  order = NULL,
  add = "mean_se",
  add.params =list(),
  error.plot = "pointrange",
  label = NULL,
  font.label =list(size = 11, color = "black"),
  label.select = NULL,
  repel = FALSE,
  label.rectangle = FALSE,
  position = position_dodge(0.8),
  ggtheme = theme_pubr()
  ...)

Example

library(ggpubr)
data("ToothGrowth")
df<-ToothGrowth
str(df)
'data.frame':   60 obs. of  3 variables:
 $ len : num  4.2 11.5 7.3 5.8 6.4 10 11.2 11.2 5.2 7 ...
 $ supp: Factor w/ 2 levels "OJ","VC": 2 2 2 2 2 2 2 2 2 2 ...
 $ dose: num  0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 ...
p<-ggviolin(df, x = "dose", y = "len")
p

violin.png

# Change the plot orientation: horizontal(改变图片方向)
p<-ggviolin(df, x = "dose", y = "len",orientation = "horiz")

violin01.png

# Add summary statistics
# ++++++++++++++++++++++++++
# Draw quantiles(画分位数)
p<-ggviolin(df, "dose", "len", add = "none",draw_quantiles = 0.5)

violin02.png

# Add box plot
p<-ggviolin(df, x = "dose", y = "len",add = "boxplot")

violin03.png

p<-ggviolin(df, x = "dose", y = "len",add = "dotplot")

violin04.png

# Add jitter points and
# change point shape by groups ("dose")
p<-ggviolin(df, x = "dose", y = "len",add = "jitter", shape = "dose")

violin05.png

# Add mean_sd + jittered points  
p<-ggviolin(df, x  =  "dose", y  =  "len", add  =  c("jitter", "mean_sd"))

violin06.png

# Change error.plot to "crossbar"
p<-ggviolin(df, x = "dose", y = "len",add = "mean_sd", error.plot = "crossbar") 
#可视化误差线，("pointrange", "linerange", "crossbar", "errorbar", "upper_errorbar", "lower_errorbar", "upper_pointrange", "lower_pointrange", "upper_linerange", "lower_linerange")

violin07.png

# Change colors
# +++++++++++++++++++++++++++
# Change outline and fill colors
p<-ggviolin(df, "dose", "len",color = "black", fill = "gray")

violin08.png

# Change outline colors by groups: dose
# Use custom color palette and add boxplot
p<-ggviolin(df, "dose", "len",  color = "dose",palette = c("#00AFBB", "#E7B800", "#FC4E07"),add = "boxplot")

violin09.png

# Change fill color by groups: dose
# add boxplot with white fill color
ggviolin(df, "dose", "len", fill  =  "dose", palette  =  c("#00AFBB", "#E7B800", "#FC4E07"), add  =  "boxplot", add.params  = list (fill  =  "white"))

violin10.png

# Plot with multiple groups  
 # fill or color box plot by a second group : "supp"  
ggviolin(df, "dose", "len", color  =  "supp", palette  = c("#00AFBB", "#E7B800"), add  =  "boxplot")