0.写在前面：

此文章主要是写在pages上面的，一些内容如果重新再用markdown写一遍的话会比较麻烦，比如一些公式下标什么的，所以采用贴图的方式了。
本文主要是关于一些论文内容的讨论（具体参见参考资料），提出了一些问题，阐述了一些方法。

`限于本人水平有限，如有错误请留言，不胜感激！

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参考资料：

2009-BFAST: An Alignment Tool for Large Scale Genome Resequencing

2011-Accelerating Next Generation Genome Reassembly Alignment Using Dynamic Programming Algorithms in FPGAs

2011-An FPGA Acceleration of Short Read Human Genome Mapping

2012-Hardware Acceleration of Short Read Mapping

2013-An acceleration method of short read mapping using FPGA

2014-FPGA acceleration of short read mapping based on sort and parallel comparison

2014-FPGA Accelerator for DNA Sequence Alignment Based on an Efficient DataDependent Memory Access Scheme

2015-A Variable Length Hash Method for Faster Short

2016-Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.

2016-Optimized and Portable FPGA-Based Systolic Cell Architecture for Smith-Waterman-Based DNA Sequence Alignment

2017-A Fast and Accurate FPGA System for Short Read Mapping Based on Parallel Comparison on Hash Table