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芯片探针与基因的对应关系

芯片探针与基因的对应关系

作者: 青蒿素2 | 来源:发表于2019-07-25 20:11 被阅读0次

    常见的物种,对应R包如下:

            gpl           organism                  bioc_package

    1     GPL32       Mus musculus                        mgu74a

    2     GPL33       Mus musculus                        mgu74b

    3     GPL34       Mus musculus                        mgu74c

    6     GPL74       Homo sapiens                        hcg110

    7     GPL75       Mus musculus                     mu11ksuba

    8     GPL76       Mus musculus                     mu11ksubb

    9     GPL77       Mus musculus                     mu19ksuba

    10    GPL78       Mus musculus                     mu19ksubb

    11    GPL79       Mus musculus                     mu19ksubc

    12    GPL80       Homo sapiens                        hu6800

    13    GPL81       Mus musculus                      mgu74av2

    14    GPL82       Mus musculus                      mgu74bv2

    15    GPL83       Mus musculus                      mgu74cv2

    16    GPL85  Rattus norvegicus                        rgu34a

    17    GPL86  Rattus norvegicus                        rgu34b

    18    GPL87  Rattus norvegicus                        rgu34c

    19    GPL88  Rattus norvegicus                         rnu34

    20    GPL89  Rattus norvegicus                         rtu34

    22    GPL91       Homo sapiens                      hgu95av2

    23    GPL92       Homo sapiens                        hgu95b

    24    GPL93       Homo sapiens                        hgu95c

    25    GPL94       Homo sapiens                        hgu95d

    26    GPL95       Homo sapiens                        hgu95e

    27    GPL96       Homo sapiens                       hgu133a

    28    GPL97       Homo sapiens                       hgu133b

    29    GPL98       Homo sapiens                     hu35ksuba

    30    GPL99       Homo sapiens                     hu35ksubb

    31   GPL100       Homo sapiens                     hu35ksubc

    32   GPL101       Homo sapiens                     hu35ksubd

    36   GPL201       Homo sapiens                       hgfocus

    37   GPL339       Mus musculus                       moe430a

    38   GPL340       Mus musculus                     mouse4302

    39   GPL341  Rattus norvegicus                       rae230a

    40   GPL342  Rattus norvegicus                       rae230b

    41   GPL570       Homo sapiens                   hgu133plus2

    42   GPL571       Homo sapiens                      hgu133a2

    43   GPL886       Homo sapiens                     hgug4111a

    44   GPL887       Homo sapiens                     hgug4110b

    45  GPL1261       Mus musculus                    mouse430a2

    49  GPL1352       Homo sapiens                       u133x3p

    50  GPL1355  Rattus norvegicus                       rat2302

    51  GPL1708       Homo sapiens                     hgug4112a

    54  GPL2891       Homo sapiens                       h20kcod

    55  GPL2898  Rattus norvegicus                     adme16cod

    60  GPL3921       Homo sapiens                     hthgu133a

    63  GPL4191       Homo sapiens                       h10kcod

    64  GPL5689       Homo sapiens                     hgug4100a

    65  GPL6097       Homo sapiens               illuminaHumanv1

    66  GPL6102       Homo sapiens               illuminaHumanv2

    67  GPL6244       Homo sapiens   hugene10sttranscriptcluster

    68  GPL6947       Homo sapiens               illuminaHumanv3

    69  GPL8300       Homo sapiens                      hgu95av2

    70  GPL8490       Homo sapiens   IlluminaHumanMethylation27k

    71 GPL10558       Homo sapiens               illuminaHumanv4

    72 GPL11532       Homo sapiens   hugene11sttranscriptcluster

    73 GPL13497       Homo sapiens         HsAgilentDesign026652

    74 GPL13534       Homo sapiens  IlluminaHumanMethylation450k

    75 GPL13667       Homo sapiens                        hgu219

    76 GPL15380       Homo sapiens      GGHumanMethCancerPanelv1

    77 GPL15396       Homo sapiens                     hthgu133b

    78 GPL17897       Homo sapiens                     hthgu133a

    参考菜鸟团博客:http://www.bio-info-trainee.com/1399.html

    https://www.jianshu.com/p/f6906ba703a0

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