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Error: package or namespace load

Error: package or namespace load

作者: Seurat_Satija | 来源:发表于2020-01-12 16:41 被阅读0次

    install.packages("C:/Users/guruiz/Desktop/org.Mm.eg.db_3.8.2.tar.gz")

    1.

    library("org.Mm.eg.db")
    Error in library("org.Mm.eg.db") : 不存在叫‘org.Mm.eg.db’这个名字的程辑包

    library("clusterProfiler")
    Error: package or namespace load failed for ‘clusterProfiler’:
    在从名字空间‘S4Vectors’中出口方法时发现了不是S4通用的函数‘%in%’
    

    2.

    > BiocManager::install("clusterProfiler")
    Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
    Installing package(s) 'clusterProfiler'
    trying URL 'https://mirrors.ustc.edu.cn/bioc//packages/3.10/bioc/bin/windows/contrib/3.6/clusterProfiler_3.14.3.zip'
    Content type 'application/zip' length 634938 bytes (620 KB)
    downloaded 620 KB
    package ‘clusterProfiler’ successfully unpacked and MD5 sums checked
    
    The downloaded binary packages are in
        C:\Windows\Temp\Rtmp2ZNkpL\downloaded_packages
    Installation path not writeable, unable to update packages: annotate,
      AnnotationDbi, Biobase, BiocGenerics, BiocManager, BiocParallel,
      BiocVersion, biocViews, boot, broom, callr, clusterProfiler, covr, DBI,
      DelayedArray, DOSE, DT, edgeR, enrichplot, exactRankTests, farver, fgsea,
      foreign, geneplotter, GenomeInfoDb, GenomeInfoDbData, GenomicRanges,
      ggpubr, GO.db, GOSemSim, graph, GSEABase, GSVA, HSMMSingleCell, IRanges,
      KernSmooth, knitr, limma, MASS, Matrix, mgcv, monocle, mvtnorm, nlme,
      org.Hs.eg.db, prettyunits, purrr, qvalue, RBGL, RcppArmadillo, rlang,
      roxygen2, RSQLite, rvcheck, rversions, S4Vectors, Seurat, SingleR,
      singscore, slam, SummarizedExperiment, survival, testthat, VGAM, xfun,
      XVector, zlibbioc
    Old packages: 'BH', 'bibtex', 'caTools', 'cli', 'curl', 'data.table',
      'digest', 'doFuture', 'fansi', 'future', 'future.apply', 'globals',
      'gplots', 'hdf5r', 'hexbin', 'hms', 'igraph', 'listenv', 'metap', 'mime',
      'pillar', 'plotly', 'plyr', 'R.oo', 'R.utils', 'R6', 'ranger', 'Rcpp',
      'RcppAnnoy', 'RcppEigen', 'Rdpack', 'reticulate', 'RSpectra', 'scales',
      'sctransform', 'SDMTools', 'statmod', 'stringi', 'uwot', 'vctrs', 'zoo'
    Update all/some/none? [a/s/n]: 
    n
    

    3

    library("GOSemSim")
    Error: package or namespace load failed for ‘GOSemSim’:
     在从名字空间‘S4Vectors’中出口方法时发现了不是S4通用的函数‘%in%’
    > library("clusterProfiler")
    Error: package or namespace load failed for ‘clusterProfiler’:
     在从名字空间‘S4Vectors’中出口方法时发现了不是S4通用的函数‘%in%’
    In addition: Warning message:
    程辑包‘clusterProfiler’是用R版本3.6.2 来建造的 

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