2020-10-23

先用conda安装

condainstallfastqc

很顺利

输入

fastqc

结果

Exceptioninthread"main"java.awt.HeadlessException:

NoX11DISPLAYvariablewasset,butthisprogramperformedanoperationwhichrequiresit.

atjava.awt.GraphicsEnvironment.checkHeadless(GraphicsEnvironment.java:204)

atjava.awt.Window.(Window.java:536)

atjava.awt.Frame.(Frame.java:420)

atjava.awt.Frame.(Frame.java:385)

atjavax.swing.JFrame.(JFrame.java:189)

atuk.ac.babraham.FastQC.FastQCApplication.(FastQCApplication.java:63)

atuk.ac.babraham.FastQC.FastQCApplication.main(FastQCApplication.java:332)

可是输入

java-version

javaversion"1.7.0_79"

OpenJDKRuntime Environment (IcedTea2.5.6) (7u79-2.5.6-0ubuntu1.15.04.1)

OpenJDKClient VM (build24.79-b02, mixed mode, sharing)

这个网上说没有图形界面

可以这样

fastqc* .fastq＆

或者

fastqc*.fq.gz＆

都可以

fastqc*.fq.gz&[1]117993

(fcx2.7)[train@trainduanefuhuangF5-1_NDSW53945]$StartedanalysisofduanefuhuangF5-1_NDSW53945_1.fq.gz

Approx5%completeforduanefuhuangF5-1_NDSW53945_1.fq.gz

Approx10%completeforduanefuhuangF5-1_NDSW53945_1.fq.gz

转载于:https://www.cnblogs.com/huangyinger/p/10429854.html