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2022-11-30 qiime2最新yml文件

2022-11-30 qiime2最新yml文件

作者: 孟婆给咱来碗汤_cc67 | 来源:发表于2022-11-29 10:30 被阅读0次

    手动码字,可能会有错别字,见谅,可以免费帮忙安装。

    1.复制下面代码,存为TXT文件,文件名为qiime2-2022.8-py38-linux-conda.yml

    channels:
      - qiime2/label/r2022.8
      - https://packages.qiime2.org/qiime2/2022.8/passed/core/
      - conda-forge
      - bioconda
      - defaults
    dependencies:
      - _libgcc_mutex=0.1
      - _openmp_mutex=4.5
      - _r-mutex=1.0.1
      - alsa-lib=1.2.6.1
      - asttokens=2.0.8
      - atpublic=3.0.1
      - attr=2.5.1
      - attrs=22.1.0
      - backcall=0.2.0
      - backports=1.0
      - backports.functools_lru_cache=1.6.4
      - bibtexparser=1.3.0
      - binutils_impl_linux-64=2.36.1
      - bioconductor-biobase=2.54.0
      - bioconductor-biocgenerics=0.40.0
      - bioconductor-biocparallel=1.28.3
      - bioconductor-biostrings=2.62.0
      - bioconductor-dada2=1.22.0
      - bioconductor-delayedarray=0.20.0
      - bioconductor-genomeinfodb=1.30.0
      - bioconductor-genomeinfodbdata=1.2.7
      - bioconductor-genomicalignments=1.30.0
      - bioconductor-genomicranges=1.46.1
      - bioconductor-iranges=2.28.0
      - bioconductor-matrixgenerics=1.6.0
      - bioconductor-rhtslib=1.26.0
      - bioconductor-rsamtools=2.10.0
      - bioconductor-s4vectors=0.32.3
      - bioconductor-shortread=1.52.0
      - bioconductor-summarizedexperiment=1.24.0
      - bioconductor-xvector=0.34.0
      - bioconductor-zlibbioc=1.40.0
      - biom-format=2.1.12
      - blast=2.13.0
      - bokeh=2.4.3
      - bowtie2=2.4.5
      - brotli=1.0.9
      - brotli-bin=1.0.9
      - brotlipy=0.7.0
      - bwidget=1.9.14
      - bzip2=1.0.8
      - c-ares=1.18.1
      - ca-certificates=2022.6.15
      - cachecontrol=0.12.11
      - cairo=1.16.0
      - certifi=2022.6.15
      - cffi=1.15.1
      - charset-normalizer=2.1.1
      - click=8.1.3
      - colorama=0.4.5
      - cryptography=37.0.4
      - curl=7.83.1
      - cutadapt=4.1
      - cycler=0.11.0
      - cython=0.29.32
      - dbus=1.13.6
      - deblur=1.1.1
      - debugpy=1.6.3
      - decorator=4.4.2
      - dendropy=4.5.2
      - dill=0.3.5.1
      - dnaio=0.9.1
      - emperor=1.0.3
      - entrez-direct=16.2
      - entrypoints=0.4
      - executing=1.0.0
      - expat=2.4.8
      - fastcluster=1.2.6
      - fasttree=2.1.11
      - fftw=3.3.10
      - flufl.lock=7.1
      - font-ttf-dejavu-sans-mono=2.37
      - font-ttf-inconsolata=3.000
      - font-ttf-source-code-pro=2.038
      - font-ttf-ubuntu=0.83
      - fontconfig=2.14.0
      - fonts-conda-ecosystem=1
      - fonts-conda-forge=1
      - fonttools=4.37.1
      - freetype=2.12.1
      - fribidi=1.0.10
      - future=0.18.2
      - gcc_impl_linux-64=12.1.0
      - gettext=0.19.8.1
      - gfortran_impl_linux-64=12.1.0
      - giflib=5.2.1
      - glib=2.72.1
      - glib-tools=2.72.1
      - gneiss=0.4.6
      - graphite2=1.3.13
      - gsl=2.7
      - gst-plugins-base=1.20.3
      - gstreamer=1.20.3
      - gxx_impl_linux-64=12.1.0
      - h5py=2.10.0
      - harfbuzz=5.1.0
      - hdf5=1.10.6
      - hdmedians=0.14.2
      - hmmer=3.1b2
      - htslib=1.15.1
      - icu=70.1
      - idna=3.3
      - ijson=3.1.3
      - importlib-metadata=4.11.4
      - importlib_resources=5.9.0
      - iniconfig=1.1.1
      - iow=1.0.5
      - ipykernel=6.15.2
      - ipython=8.5.0
      - ipywidgets=8.0.2
      - iqtree=2.2.0.3
      - isa-l=2.30.0
      - jack=1.9.18
      - jedi=0.18.1
      - jinja2=3.1.2
      - joblib=1.1.0
      - jpeg=9e
      - jsonschema=4.15.0
      - jupyter_client=7.3.5
      - jupyter_core=4.11.1
      - jupyterlab_widgets=3.0.3
      - kernel-headers_linux-64=2.6.32
      - keyutils=1.6.1
      - kiwisolver=1.4.4
      - krb5=1.19.3
      - lcms2=2.12
      - ld_impl_linux-64=2.36.1
      - lerc=3.0
      - libblas=3.9.0
      - libbrotlicommon=1.0.9
      - libbrotlidec=1.0.9
      - libbrotlienc=1.0.9
      - libcap=2.64
      - libcblas=3.9.0
      - libclang=14.0.6
      - libclang13=14.0.6
      - libcups=2.3.3
      - libcurl=7.83.1
      - libdb=6.2.32
      - libdeflate=1.10
      - libedit=3.1.20191231
      - libev=4.33
      - libevent=2.1.10
      - libffi=3.4.2
      - libflac=1.3.4
      - libgcc-devel_linux-64=12.1.0
      - libgcc-ng=12.1.0
      - libgfortran-ng=12.1.0
      - libgfortran5=12.1.0
      - libglib=2.72.1
      - libgomp=12.1.0
      - libiconv=1.16
      - libidn2=2.3.3
      - liblapack=3.9.0
      - liblapacke=3.9.0
      - libllvm10=10.0.1
      - libllvm14=14.0.6
      - libnghttp2=1.47.0
      - libnsl=2.0.0
      - libogg=1.3.4
      - libopenblas=0.3.21
      - libopus=1.3.1
      - libpng=1.6.37
      - libpq=14.5
      - libsanitizer=12.1.0
      - libsndfile=1.0.31
      - libsodium=1.0.18
      - libsqlite=3.39.3
      - libssh2=1.10.0
      - libstdcxx-devel_linux-64=12.1.0
      - libstdcxx-ng=12.1.0
      - libtiff=4.4.0
      - libtool=2.4.6
      - libudev1=249
      - libunistring=0.9.10
      - libuuid=2.32.1
      - libvorbis=1.3.7
      - libwebp-base=1.2.4
      - libxcb=1.13
      - libxkbcommon=1.0.3
      - libxml2=2.9.14
      - libxslt=1.1.35
      - libzlib=1.2.12
      - llvmlite=0.36.0
      - lockfile=0.12.2
      - lxml=4.9.1
      - lz4=4.0.0
      - lz4-c=1.9.3
      - mafft=7.505
      - make=4.3
      - markupsafe=2.1.1
      - matplotlib=3.5.3
      - matplotlib-base=3.5.3
      - matplotlib-inline=0.1.6
      - msgpack-python=1.0.4
      - munkres=1.1.4
      - mysql-common=8.0.30
      - mysql-libs=8.0.30
      - natsort=8.2.0
      - nbformat=5.4.0
      - ncurses=6.3
      - nest-asyncio=1.5.5
      - networkx=2.8.6
      - nose=1.3.7
      - nspr=4.32
      - nss=3.78
      - numba=0.53.1
      - numpy=1.23.2
      - openjdk=17.0.3
      - openjpeg=2.5.0
      - openssl=1.1.1q
      - packaging=21.3
      - pandas=1.4.4
      - pango=1.50.9
      - parso=0.8.3
      - patsy=0.5.2
      - pbzip2=1.1.13
      - pcre=8.45
      - pcre2=10.37
      - perl=5.32.1
      - perl-archive-tar=2.40
      - perl-carp=1.50
      - perl-common-sense=3.75
      - perl-compress-raw-bzip2=2.201
      - perl-compress-raw-zlib=2.202
      - perl-encode=3.19
      - perl-exporter=5.74
      - perl-exporter-tiny=1.002002
      - perl-extutils-makemaker=7.64
      - perl-io-compress=2.106
      - perl-io-zlib=1.11
      - perl-json=4.09
      - perl-json-xs=2.34
      - perl-list-moreutils=0.430
      - perl-list-moreutils-xs=0.430
      - perl-parent=0.238
      - perl-pathtools=3.75
      - perl-scalar-list-utils=1.63
      - perl-types-serialiser=1.01
      - pexpect=4.8.0
      - pickleshare=0.7.5
      - pigz=2.6
      - pillow=9.2.0
      - pip=22.2.2
      - pixman=0.40.0
      - pkgutil-resolve-name=1.3.10
      - pluggy=1.0.0
      - ply=3.11
      - portaudio=19.6.0
      - prompt-toolkit=3.0.31
      - psutil=5.9.2
      - pthread-stubs=0.4
      - ptyprocess=0.7.0
      - pulseaudio=14.0
      - pure_eval=0.2.2
      - py=1.11.0
      - pycparser=2.21
      - pygments=2.13.0
      - pynndescent=0.5.7
      - pyopenssl=22.0.0
      - pyparsing=3.0.9
      - pyqt=5.15.7
      - pyqt5-sip=12.11.0
      - pyrsistent=0.18.1
      - pysocks=1.7.1
      - pytest=7.1.3
      - python=3.8.13
      - python-dateutil=2.8.2
      - python-fastjsonschema=2.16.1
      - python-isal=1.0.1
      - python_abi=3.8
      - pytz=2022.2.1
      - pyyaml=6.0
      - pyzmq=23.2.1
      - q2-alignment=2022.8.0
      - q2-composition=2022.8.0
      - q2-cutadapt=2022.8.0
      - q2-dada2=2022.8.0
      - q2-deblur=2022.8.0
      - q2-demux=2022.8.0
      - q2-diversity=2022.8.0
      - q2-diversity-lib=2022.8.0
      - q2-emperor=2022.8.0
      - q2-feature-classifier=2022.8.0
      - q2-feature-table=2022.8.1
      - q2-fragment-insertion=2022.8.0
      - q2-gneiss=2022.8.0
      - q2-longitudinal=2022.8.0
      - q2-metadata=2022.8.0
      - q2-mystery-stew=2022.8.0
      - q2-phylogeny=2022.8.0
      - q2-quality-control=2022.8.0
      - q2-quality-filter=2022.8.0
      - q2-sample-classifier=2022.8.0
      - q2-taxa=2022.8.0
      - q2-types=2022.8.0
      - q2-vsearch=2022.8.0
      - q2cli=2022.8.0
      - q2galaxy=2022.8.1
      - q2templates=2022.8.0
      - qiime2=2022.8.3
      - qt-main=5.15.4
      - r-backports=1.4.1
      - r-base=4.1.3
      - r-bh=1.78.0_0
      - r-bitops=1.0_7
      - r-brio=1.1.3
      - r-callr=3.7.2
      - r-cli=3.4.0
      - r-cluster=2.1.3
      - r-colorspace=2.0_3
      - r-crayon=1.5.1
      - r-deldir=1.0_6
      - r-desc=1.4.2
      - r-diffobj=0.3.5
      - r-digest=0.6.29
      - r-ellipsis=0.3.2
      - r-evaluate=0.16
      - r-fansi=1.0.3
      - r-farver=2.1.1
      - r-formatr=1.12
      - r-fs=1.5.2
      - r-futile.logger=1.4.3
      - r-futile.options=1.0.1
      - r-getopt=1.20.3
      - r-ggplot2=3.3.6
      - r-glue=1.6.2
      - r-gtable=0.3.1
      - r-hwriter=1.3.2.1
      - r-interp=1.1_3
      - r-isoband=0.2.5
      - r-jpeg=0.1_9
      - r-jsonlite=1.8.0
      - r-labeling=0.4.2
      - r-lambda.r=1.2.4
      - r-lattice=0.20_45
      - r-latticeextra=0.6_30
      - r-lifecycle=1.0.1
      - r-magrittr=2.0.3
      - r-mass=7.3_58.1
      - r-matrix=1.4_1
      - r-matrixstats=0.62.0
      - r-mgcv=1.8_40
      - r-munsell=0.5.0
      - r-nlme=3.1_159
      - r-optparse=1.7.3
      - r-permute=0.9_7
      - r-pillar=1.8.1
      - r-pkgconfig=2.0.3
      - r-pkgload=1.3.0
      - r-plyr=1.8.7
      - r-png=0.1_7
      - r-praise=1.0.0
      - r-processx=3.7.0
      - r-ps=1.7.1
      - r-r6=2.5.1
      - r-rcolorbrewer=1.1_3
      - r-rcpp=1.0.9
      - r-rcppeigen=0.3.3.9.2
      - r-rcppparallel=5.1.5
      - r-rcurl=1.98_1.8
      - r-rematch2=2.1.2
      - r-reshape2=1.4.4
      - r-rlang=1.0.5
      - r-rprojroot=2.0.3
      - r-scales=1.2.1
      - r-snow=0.4_4
      - r-stringi=1.7.8
      - r-stringr=1.4.1
      - r-testthat=3.1.4
      - r-tibble=3.1.8
      - r-utf8=1.2.2
      - r-vctrs=0.4.1
      - r-vegan=2.6_2
      - r-viridislite=0.4.1
      - r-waldo=0.4.0
      - r-withr=2.5.0
      - raxml=8.2.12
      - readline=8.1.2
      - requests=2.28.1
      - samtools=1.15.1
      - scikit-bio=0.5.7
      - scikit-learn=0.24.1
      - scipy=1.8.1
      - seaborn=0.12.0
      - seaborn-base=0.12.0
      - sed=4.8
      - sepp=4.3.10
      - setuptools=65.3.0
      - sip=6.6.2
      - six=1.16.0
      - sortmerna=2.0
      - sqlite=3.39.3
      - stack_data=0.5.0
      - statsmodels=0.13.2
      - sysroot_linux-64=2.12
      - tbb=2020.2
      - threadpoolctl=3.1.0
      - tk=8.6.12
      - tktable=2.10
      - toml=0.10.2
      - tomli=2.0.1
      - tornado=6.2
      - tqdm=4.64.1
      - traitlets=5.3.0
      - typing_extensions=4.3.0
      - tzlocal=2.1
      - umap-learn=0.5.3
      - unicodedata2=14.0.0
      - unifrac=1.1.1
      - unifrac-binaries=1.1.1=h15a0faf_1
      - urllib3=1.26.11
      - vsearch=2.21.1
      - wcwidth=0.2.5
      - wget=1.20.3
      - wheel=0.37.1
      - widgetsnbextension=4.0.3
      - xcb-util=0.4.0
      - xcb-util-image=0.4.0
      - xcb-util-keysyms=0.4.0
      - xcb-util-renderutil=0.3.9
      - xcb-util-wm=0.4.1
      - xopen=1.6.0
      - xorg-fixesproto=5.0
      - xorg-inputproto=2.3.2
      - xorg-kbproto=1.0.7
      - xorg-libice=1.0.10
      - xorg-libsm=1.2.3
      - xorg-libx11=1.7.2
      - xorg-libxau=1.0.9
      - xorg-libxdmcp=1.1.3
      - xorg-libxext=1.3.4
      - xorg-libxfixes=5.0.3
      - xorg-libxi=1.7.10
      - xorg-libxrender=0.9.10
      - xorg-libxt=1.2.1
      - xorg-libxtst=1.2.3
      - xorg-recordproto=1.14.2
      - xorg-renderproto=0.11.1
      - xorg-xextproto=7.3.0
      - xorg-xproto=7.0.31
      - xz=5.2.6
      - yaml=0.2.5
      - zeromq=4.3.4
      - zipp=3.8.1
      - zlib=1.2.12
      - zstd=1.5.2
    

    2安装qiime2

    #wget https://data.qiime2.org/distro/core/qiime2-2022.8-py38-linux-conda.yml
    #(这条命令我们已经通过复制上面文字,完成了)
    conda env create -n qiime2-2022.8 --file qiime2-2022.8-py38-linux-conda.yml
    #我们只需要运行这个命令就可以了
    

    3.网速不好,可能安装不成功

    安装失败

    4继续重复复操作步骤2,粘贴代码,进度条100%就成功了。

    重复安装

    5、不行的话,修改一下镜像,把上面代码channels 换成下面这个

    channels:
        - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/qiime2
        - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
        - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
        - defaults
    
    

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