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计算Subcellular locailzation

计算Subcellular locailzation

作者: 余绕 | 来源:发表于2022-02-03 22:03 被阅读0次
    open FA,"$ARGV[0]";
    
    while(<FA>){
        chomp;
        
        if (exists $hash{$_}){
        $hash{$_}+=1;
        }
        else{
            $hash{$_}=1;
        }
        
    }
    
    open OU1,">$ARGV[1]";
    
    foreach(sort {$hash{$a}<=>$hash{$b} }keys %hash){
    #print"$_\n";
    print OU1 "$_\t$hash{$_}\n";
    }
    

    Input file

    cytoplasm
    plasma membrane
    chloroplast
    nucleus
    cytoplasm
    cytoplasm
    cytoplasm
    

    output file

    "cytoplasm,plasma membrane" 1
    "nucleus,plasma membrane"   1
    "cytoplasm,nucleus" 4
    "chloroplast,mitochondria"  4
    Golgi apparatus 7
    peroxisome  19
    endoplasmic reticulum   26
    cytoskeleton    35
    vacuolar membrane   57
    mitochondria    127
    extracellular   148
    plasma membrane 170
    nucleus 440
    cytoplasm   637
    chloroplast 1132
    

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