1. prepare raw dataset
Prepare raw dataset
$ ls
00hr.read1.fq.bz2
00hr.read1.fq.bz2.md5
00hr.read2.fq.bz2
00hr.read2.fq.bz2.md5
00hr_peaks.bed
00hr_peaks.bed.md5
$ cat *.md5 > md5.txt
Upload file list
00hr.read1.fq.bz2
00hr.read2.fq.bz2
00hr_peaks.bed
md5.txt
Upload data to GEO ftp by filezilla:
geo_account.png
ftp.png
please refer to https://www.ncbi.nlm.nih.gov/geo/info/submissionftp.html
2. prepare metadata
Template for GEO submission (Excel file):
https://www.ncbi.nlm.nih.gov/geo/info/examples/seq_template_v2.1.xls
3. notify GEO officer
https://submit.ncbi.nlm.nih.gov/geo/submission/
Waiting for GSE ID.
4. apply for reviewer access token
GEO.png
GEO will send a token to your email. Reviewers can view your dataset with an access token.
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