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使用GO.db包将GO identifier转化为GOterm

使用GO.db包将GO identifier转化为GOterm

作者: 一只烟酒僧 | 来源:发表于2020-11-10 00:17 被阅读0次
    library(GO.db)
    class(GO.db)
    #[1] "GODb"
    #attr(,"package")
    #[1] "AnnotationDbi"
    methods(class = "GODb")
     [1] $                      $<-                    annotatedDataFrameFrom assayData              assayData<-            coerce                
     [7] coerce<-               columns                combine                contents               dbconn                 dbfile                
    [13] dbInfo                 dbmeta                 dbschema               ExpressionSet          featureNames           featureNames<-        
    [19] initialize             isNA                   keys                   keytypes               mapIds                 mappedkeys            
    [25] metadata               nhit                   revmap                 sample                 sampleNames            sampleNames<-         
    [31] saveDb                 select                 show                   species                storageMode            storageMode<-         
    [37] taxonomyId             updateObject          
    see '?methods' for accessing help and source code
    mapIds(GO.db,"GO:1904813","TERM","GOID")
    'select()' returned 1:1 mapping between keys and columns
                        GO:1904813 
    "ficolin-1-rich granule lumen" 
    

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