差异的甲基化
差异的甲基化位点位于基因的prometer区域,我们才去保留,主要包括(TSS200和TSS1500)
注释文件来自ChAMP工具包,data一下即可
一般的差异定义标准为
![](https://img.haomeiwen.com/i7406296/07645c045d711912.png)
参考文献:Immune Signature-Based Subtypes of Cervical Squamous Cell Carcinoma Tightly Associated with
Human Papillomavirus Type 16 Expression, Molecular Features, and Clinical Outcome
差异标准提高:
![](https://img.haomeiwen.com/i7406296/20c48f87a55cf90b.png)
参考文献:Epigenetic age acceleration of cervical squamous cell carcinoma converged to human papillomavirus 16/18 expression, immunoactivation, and favourable prognosis
promoter regions 默认(TSS200和TSS1500)
![](https://img.haomeiwen.com/i7406296/06f0758b812f8a75.png)
![](https://img.haomeiwen.com/i7406296/7ee77c60bb1436a6.png)
参考文献:The signature of HBV-related liver disease in peripheral blood mononuclear cell DNA methylation
![](https://img.haomeiwen.com/i7406296/7be45a4a5d19e597.png)
![](https://img.haomeiwen.com/i7406296/efa72d9f462e2c87.png)
![](https://img.haomeiwen.com/i7406296/b5bd3164dba8af56.png)
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