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sratoolkits报错

sratoolkits报错

作者: 佳名 | 来源:发表于2021-01-11 10:37 被阅读0次
    fastq-dump --gzip --split-3 SRR7429961.sra
    2021-01-11T02:38:25 fastq-dump.2.9.6 err: item not found while constructing within virtual database module - the path 'SRR7429961.sra' cannot be opened as database or table
    

    删除后缀名后,可以拆分成功,依旧报错

    fastq-dump --gzip --split-3 SRR7429945
    2021-01-11T02:10:52 fastq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )
    2021-01-11T02:26:46 fastq-dump.2.9.6 sys: connection canceled while reading file within network system module - mbedtls_ssl_read returned -80 ( NET - Connection was reset by peer )
    2021-01-11T02:28:09 fastq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )
    2021-01-11T02:33:47 fastq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )
    ...
    

    竟然需要联网才可以拆分成功

    Read 12986441 spots for SRR7429953
    Written 12986441 spots for SRR7429953
    

    spots即为序列条数

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