以IRX15A为例
Gene Finding in Eukaryota (softberry.com) 1 预测网站
蛋白二级三级结构预测
PSIPRED Workbench (ucl.ac.uk) 二级
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SWISS-MODEL Interactive Workspace (expasy.org) 三级结构预测
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Services- DTU Health Tech 跨膜结构分析网站
SignalP - 5.0 - Services - DTU Health Tech 信号肽分析 IRX15A的N端没有信号肽
PlantCARE, a database of plant promoters and their cis-acting regulatory elements (ugent.be) 启动子分析
motif分析预测数据库 用MEME-CHIP预测转录因子的结合
用MEME-CHIP预测转录因子的结合 - 简书 (jianshu.com)
miRNA的靶点预测 psRNATarget: A Plant Small RNA Target Analysis Server (2017 Update) (zhaolab.org)还是可以用
我输入的文件是IRX15A3UTR片段,找到zma-miR529-5p,靶点为
RNA:UUCUUCUACUUUUUUUUUUCU
DNA:TTCTTCTACTTTTTTTTTTCT
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基因结构预测 Gene Finding in Eukaryota (softberry.com)
mRNA的二级结构预测RNAfold web server (univie.ac.at)
IRX15A
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