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Ubuntu安装IGV

Ubuntu安装IGV

作者: 佳名 | 来源:发表于2020-09-08 15:25 被阅读0次

    软件下载,解压
    命令行输入:

    ./igv.sh
    
    echo Using bundled JDK.
    WARNING: package com.sun.java.swing.plaf.windows not in java.desktop
    WARNING: package sun.awt.windows not in java.desktop
    openjdk version "11.0.7" 2020-04-14
    OpenJDK Runtime Environment AdoptOpenJDK (build 11.0.7+10)
    OpenJDK 64-Bit Server VM AdoptOpenJDK (build 11.0.7+10, mixed mode)
    WARN [2020-09-08T15:22:12,701]  [Globals.java:139] [main]  Development mode is enabled
    INFO [2020-09-08T15:22:12,722]  [DirectoryManager.java:179] [main]  IGV Directory: /home/luozhixin/igv
    INFO [2020-09-08T15:22:14,991]  [Main.java:159] [AWT-EventQueue-0]  Startup  IGV Version 2.8.4 06/16/2020 01:11 PM
    INFO [2020-09-08T15:22:15,000]  [Main.java:160] [AWT-EventQueue-0]  Java 11.0.7 (build 11.0.7+10) 2020-04-14
    INFO [2020-09-08T15:22:15,000]  [Main.java:163] [AWT-EventQueue-0]  Java Vendor: AdoptOpenJDK https://adoptopenjdk.net/
    INFO [2020-09-08T15:22:15,000]  [Main.java:165] [AWT-EventQueue-0]  JVM: OpenJDK 64-Bit Server VM AdoptOpenJDK   
    INFO [2020-09-08T15:22:15,001]  [DirectoryManager.java:84] [AWT-EventQueue-0]  Fetching user directory... 
    INFO [2020-09-08T15:22:15,035]  [Main.java:168] [AWT-EventQueue-0]  Default User Directory: /home/luozhixin
    INFO [2020-09-08T15:22:15,035]  [Main.java:169] [AWT-EventQueue-0]  OS: Linux 4.15.0-112-generic amd64
    INFO [2020-09-08T15:22:15,697]  [GenomeManager.java:192] [pool-3-thread-1]  Loading genome: /home/luozhixin/igv/genomes/mm10.genome
    INFO [2020-09-08T15:22:17,544]  [GenomeComboBox.java:90] [AWT-EventQueue-0]  Enter genome combo box
    INFO [2020-09-08T15:22:17,549]  [GenomeManager.java:284] [pool-3-thread-1]  Genome loaded.  id= mm10
    INFO [2020-09-08T15:22:17,554]  [CommandListener.java:120] [Thread-4]  Listening on port 60151
    
    2020-09-08 15-25-27屏幕截图.png

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