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[转] 在计算机集群的用户文件夹安装Alps软件,详细步骤:

[转] 在计算机集群的用户文件夹安装Alps软件,详细步骤:

作者: yfren | 来源:发表于2018-06-30 04:51 被阅读0次

转 from http://blog.sina.com.cn/s/blog_700ab4bd0102wxuy.html

Finally failed

  • All packages: (1) HDF5, (2) CMAKE, (3) ALPS
  • Some commends need sudo
  • Director alps* need to put in Downloads director. Or it will cannot be installed

all steps are done at $HOME directory; except alps*

  1. Install hdf5-dependent libriries // skiped in my installation //

    1.1 zlib:

     wget http://zlib.net/zlib-1.2.8.tar.gz | gunzip | tar xf  
     # http://zlib.net/fossils/
     mkdir -p $HOME/local/zlib
     cd zlib-1.2.8
     sh configure --prefix=$HOME/local/zlib --libdir=$HOME/lib/ --includedir=$HOME/lib/ --sharedir=$HOME/share
     make
     make check
     make install
    

    1.2 szip :

     wget https://support.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar | tar xf
     mkdir -p $HOME/local/szip
     cd szip-2.1
     sh configure --prefix=$HOME/local/szip --libdir=$HOME/lib/ --includedir=$HOME/lib/ --sharedstatedir=$HOME/share/
     make
     make check
     make install
    
  2. Install hdf5
    2.1 download hdf5:

     wget https://support.hdfgroup.org/ftp/HDF5/current18/src/hdf5-1.8.18.tar
    

    2.2 unpack

     tar xf hdf5-1.8.18.tar
    

    2.3 install it to $HOME/opt/; // Some times, sudo is needed in the following commends //

     mkdir -p $HOME/opt
     cd hdf5-1.8.18/
     sh configure --prefix=$HOME/opt/ --enable-fortran --enable-cxx --with-szlib=$HOME/local 
     make
     make check
     make install
     make check-install
    
  3. Install cmake
    3.1 download cmake

     wget https://cmake.org/files/v3.7/cmake-3.7.0.tar.gz | gunzip | tar xf
    

    3.2 install cmake

     mkdir -p $HOME/cmake
     cd cmake
     sh bootstrap --prefix=$HOME/cmake/ 
     make
     make install
    
  4. Build ALPS
    4.1 download

     wget http://alps.comp-phys.org/static/software/releases/alps-2.2.b4-src-with-boost.tar.gz | gunzip |tar xf
    

    4.2 configure

     cd $HOME/alps-2.2.b4-src-with-boost/ 
     # Director alps\* need to put in **Downloads** director. Or it will cannot be installed
    
     CXX=g++ $HOME/cmake/bin/cmake -D BLAS_LIBRARY=/usr/lib/libblas.so. -D LAPACK_LIBRARY=/usr/lib/liblapack.so -D CMAKE_INSTALL_PREFIX=$HOME/ALPS -D LAPACK_64_BIT=ON  -D HDF5_LIBRARIES=$HOME/opt/lib/libhdf5.so. -D HDF5_INCLUDE_DIR=$HOME/opt/include/ $HOME/alps-2.2.b4-src-with-boost/alps/
     # Here CMAKE_INSTALL_PREFIX might be $HOME/Downloads/ALPS to install alps in Downloads director. Similarly,  the last commend $HOME/alps-2.2.b4-src-with-boost/alps/ might also be $HOME/alps-2.2.b4-src-with-boost/alps/
     export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/opt/lib
    

    4.3 make (it takes 2h)

     make 
    
         # finally failed in this step with error: 
         make[2]: *** No rule to make target `/home/yfren/opt/lib/libhdf5.so.', needed by `src/alps  /libalps.so.2.2.b4'.  Stop.
         make[1]: *** [src/alps/CMakeFiles/alps.dir/all] Error 2
         make: *** [all] Error 2
    
     make test
     make install 
    
  5. Job script file

     export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/opt/lib
     $HOME/alps/bin/pyalps Your_Code.py
    

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