2020-09-05

#大服务器跑BUSCO要配置环境变量，使用前把这四行贴进去
export BUSCO_CONFIG_FILE="/w/00/g/g00/BUSCO/config.ini"
export AUGUSTUS_CONFIG_PATH="/w/00/g/g00/share_software/augustus-3.2.3/config"
export PATH=/data/apps/augustus/augustus-3.2.3/bin:/data/apps/augustus/augustus-3.2.3/scripts:$PATH
export PYTHONPATH=/data/apps/BUSCO/BUSCO_3.0.2b/lib/python

#参数 -m(mode):有三种模式，proteins,genome 还有个忘了..；-i input文件;-l 真核生物的标准库，这个库已经下载到下面的路径中；-o output;-c 线
程数
python /data/apps/BUSCO/BUSCO_3.0.2b/scripts/run_BUSCO.py -i /w/00/g/g00/cly/ragtag/denove/ragtag_output/scaffold/ragtag_output/ra
gtag.scaffolds.fasta -m genome -l /wtmp/user093/software/embryophyta_odb10 -o shanyang -c 20