software01

Sniffles

wget https://github.com/fritzsedlazeck/Sniffles/archive/master.tar.gz -O Sniffles.tar.gz
tar xzvf Sniffles.tar.gz
cd Sniffles-master/
mkdir -p build/
cd build/
cmake ..
make

https://github.com/fritzsedlazeck/Sniffles

FREEC

https://github.com/BoevaLab/FREEC/archive/refs/tags/v11.6.tar.gz
tar -zxvf v116.tar.gz
cd /src
make

image.png

conda clean --all
conda clean -p      //删除没有用的包
conda clean -t      //tar打包
conda clean -y -all //删除所有的安装包及cache
conda clean -y --all

source activate your_env_name(虚拟环境名称)

//下面是创建python=3.6版本的环境，取名叫py36
conda create -n py36 python=3.6 

conda install python=2
conda install -c conda-forge biopython # 不起作用
conda install -c r rpy2 
conda install -m rpy2

conda create -n r4
https://www.jianshu.com/p/9a77174549cc
conda activate r4

conda 显示所有的环境
conda info --env

增加镜像

conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
conda config --set show_channel_urls yes
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/pkgs/free/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/pkgs/main/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/msys2/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/bioconda/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/menpo/

cd /your/path/
wget https://cran.r-project.org/src/base/R-3/R-3.6.2.tar.gz
tar -xzvf R-3.6.2.tar.gz
cd /your/path/R-3.6.2
./configure --prefix=/your/path/R  --enable-R-shlib --with-readline=yes --with-libpng=yes --with-blas 
make -j3
make install

wget https://cran.r-project.org/src/base/R-3/R-3.5.2.tar.gz