Day3-软件下载.png

实际操作

1. 查询服务器多少位

bio04@VM-0-10-ubuntu:~$ uname -a
Linux VM-0-10-ubuntu 4.15.0-54-generic #58-Ubuntu SMP Mon Jun 24 10:55:24 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux

2. 粘贴下载网址

bio04@VM-0-10-ubuntu:~/biosoft$ wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda-latest-Linux-x86_64.sh
--2020-03-15 15:01:26--  https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda-latest-Linux-x86_64.sh
Resolving mirrors.tuna.tsinghua.edu.cn (mirrors.tuna.tsinghua.edu.cn)... 101.6.8.193, 2402:f000:1:408:8100::1
Connecting to mirrors.tuna.tsinghua.edu.cn (mirrors.tuna.tsinghua.edu.cn)|101.6.8.193|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 27208383 (26M) [application/octet-stream]
Saving to: ‘Miniconda-latest-Linux-x86_64.sh’

Miniconda-latest-Linux-x86_64.sh      100%[=========================================================================>]  25.95M  3.45MB/s    in 6.4s    

3. 安装conda

bio04@VM-0-10-ubuntu:~/biosoft$ bash Miniconda-latest-Linux-x86_64.sh

Welcome to Miniconda2 4.0.5 (by Continuum Analytics, Inc.)

In order to continue the installation process, please review the license
agreement.
Please, press ENTER to continue
>>> enter
Thank you for installing Miniconda2!

4. 激活-打开conda

bio04@VM-0-10-ubuntu:~/biosoft$ source ~/.bashrc
bio04@VM-0-10-ubuntu:~/biosoft$ conda
usage: conda [-h] [-V] [--debug] command ...

conda is a tool for managing and deploying applications, environments and packages.

5. 添加清华镜像

bio04@VM-0-10-ubuntu:~/biosoft$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
bio04@VM-0-10-ubuntu:~/biosoft$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
bio04@VM-0-10-ubuntu:~/biosoft$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
bio04@VM-0-10-ubuntu:~/biosoft$ conda config --set show_channel_urls yes

6. 查看当前所有软件列表

bio04@VM-0-10-ubuntu:~/biosoft$ conda list
# packages in environment at /home/bio04/biosoft/enter:
#
conda                     4.0.5                    py27_0    defaults
conda-env                 2.4.5                    py27_0    defaults
openssl                   1.0.2g                        0    defaults
pip                       8.1.1                    py27_1    defaults
pycosat                   0.6.1                    py27_0    defaults
pycrypto                  2.6.1                    py27_0    defaults
python                    2.7.11                        0    defaults
pyyaml                    3.11                     py27_1    defaults
readline                  6.2                           2    defaults
requests                  2.9.1                    py27_0    defaults
setuptools                20.3                     py27_0    defaults
sqlite                    3.9.2                         0    defaults
tk                        8.5.18                        0    defaults
wheel                     0.29.0                   py27_0    defaults
yaml                      0.1.6                         0    defaults
zlib                      1.2.8                         0    defaults
bio04@VM-0-10-ubuntu:~/biosoft$ conda search fastqc

7. 搜索软件fastqc（数据质控软件）

bio04@VM-0-10-ubuntu:~/biosoft$ conda search fastqc
Fetching package metadata: ..........
bioconductor-fastqcleaner    1.0.0            r351hf484d3e_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             1.2.0             r36he1b5a44_1  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             1.4.0             r36he1b5a44_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
biopet-extractadaptersfastqc    0.1                      py27_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.1                      py35_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.1                      py36_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.1                           1  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.2                      py27_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.2                      py35_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.2                      py36_0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.2                           1  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 
                             0.2                           2  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/noarch/ 
fastqc                       0.10.1                        0  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64/ 

8. 自动安装软件

bio04@VM-0-10-ubuntu:~/biosoft$ conda install fastqc=0.11.7 -y
Fetching package metadata: ..........
Solving package specifications: ..........
Warning: >10 possible package resolutions (only showing differing packages):
  - lz4-c-1.8.3-he1b5a44_1001.tar.bz2, xorg-libxfixes-5.0.3-h14c3975_1004.tar.bz2, xorg-libxrender-0.9.10-h516909a_1002.tar.bz2, xorg-recordproto-1.14.2-h516909a_1002.tar.bz2