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细胞系cell line相关数据库

细胞系cell line相关数据库

作者: siyao41 | 来源:发表于2023-10-10 10:08 被阅读0次

    CLO(Cell Line Ontology)

    http://www.clo-ontology.org/index.php

    Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, Schürer TC, Pang C, Malone J, Parkinson H, Liu Y, Takatsuki T, Saijo K, Masuya H, Nakamura Y, Brush MH, Haendel MA, Zheng J, Stoeckert CJ, Peters B, Mungall CJ, Carey TE, States DJ, Athey BD, He Y. CLO: The Cell Line Ontology. Journal of Biomedical Semantics. 2014, 5:37. doi:10.1186/2041-1480-5-37. PMID: 25852852. PMCID: PMC4387853.

    Sarntivijai S, Xiang Z, Meehan TF, Diehl AD,Vempati U, Schurer S, Pang C, Malone J, Parkinson H, Athey BD, He Y. Cell Line Ontology: Redesigning Cell Line Knowledgebase to Aid Integrative Translational Informatics. International Conference on Biomedical Ontologies (ICBO), University at Buffalo, NY, July 26-30, 2011. Full length paper. Pages 25 - 32.

    The Cell Line Ontology (CLO) is a community-driven ontology that is developed to standardize and integrate cell line information and support computer-assisted reasoning.

    CLO includes more than 36,000 cell lines generated and used in the world. The CLO cell line data were first drawn from Cell Line Knowledgebase (CLKB) entries, which consist of 8740 cell lines stored in ATCC and [HyperCLDB](http://bioinformatics. istge.it/cldb/). Additional 27,000 permanent cell lines are obtained from European Bioinformatics Institute (EBI) Coriell Catalogue Ontology that represents cell lines from the Coriell cell repository, and cell lines (both primary and permanent) provided by the Bioassay Ontology ([BAO](http://bioassay ontology.org/)) development team. Cell lines that are listed in multiple repositories contain cross-reference pointers to these repositories.

    image.png

    Cellosaurus - a knowledge resource on cell lines

    https://www.cellosaurus.org/description.html

    Release 40 of December 2021

    134839 cell lines (101276 human, 22999 mouse, 2498 rat)

    134839 cell lines (101276 human, 22999 mouse, 2498 rat)
       747 species represented
     96745 synonyms
    396097 cross-references to 97 ontologies, databases, catalogs, etc.
    138234 references to 23257 distinct publications (papers, patents, theses, etc.)
     13484 web links
    
      8032 human, mouse and dog cell lines with STR profiles (from 669 distinct sources)
    

    包括以下内容:

    • Immortalized cell lines
    • Naturally immortal cell lines (example: stem cell lines)
    • Finite life cell lines when those are distributed and used widely
    • Vertebrate cell line with an emphasis on human, mouse and rat cell lines
    • Invertebrate (insects and ticks) cell lines

    不包含:

    • Primary cell lines (with the exception of the finite life cell lines described above)
    • Plant cell lines

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