#!/bin/bash
if [ $# !=3 ];then
echo $0 <gtf> <fasta> <refOut>"
if
extract_splice_sites.py $1 >splice_sites.txt
extract_exons.py $1 >exons.txt
hisat2-build --exon exons.txtt --ss splice_sites.txt $2 $3
#!/bin/bash
if [ $# !=3 ];then
echo $0 <gtf> <fasta> <refOut>"
if
extract_splice_sites.py $1 >splice_sites.txt
extract_exons.py $1 >exons.txt
hisat2-build --exon exons.txtt --ss splice_sites.txt $2 $3
本文标题：hasit2 build index
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