2024-02-23 基因组组装

利用Canu进行组装

canu -p YueC -d canu genomeSize=3g useGrid=false maxThreads=24 -pacbio-hifi all.ccs.fastq.gz

当基因组太大时，maxThreads设置太小，会报错，不运行。

利用Hifiasm进行组装

hifiasm --primary -o YueC -t 10 --h1 /public/home/agis_kongweilong/Project/YueCproject/Genome/HiC/Unknown_BS547-003H0001_good_1.fq.gz --h2 /public/home/agis_kongweilong/Project/YueCproject/Genome/HiC/Unknown_BS547-003H0001_good_2.fq.gz /public/home/agis_kongweilong/Project/YueCproject/Genome/Hifi/all.ccs.fastq.gz