RseQC是对比对结果进行质控的工具,在MAC环境下,可以优先选用conda命令进行安装,不会报错。
$ conda install rseqc #安装RseQC,注意都是小写
Solving environment: /
Warning: 2 possible package resolutions (only showing differing packages):
-
defaults::requests-2.18.4-py27h9b2b37c_1, defaults::urllib3-1.22-py27hc3787e9_0
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bioconda::urllib3-1.12-py27_0, defaults::requests-2.14.2-py27done
Package Plan
environment location: /Users/xiuliliu/miniconda3
added / updated specs: -
rseqc
The following packages will be downloaded:package build wheel-0.30.0 py27h677a027_1 66 KB jedi-0.11.1 py27_0 297 KB idna-2.6 py27hedea723_1 122 KB python-2.7.14 h138c1fe_30 11.5 MB backports.shutil_get_terminal_size-1.0.0 py27hc9115de_2 8 KB pycparser-2.18 py27h0d28d88_1 167 KB send2trash-1.5.0 py27_0 16 KB bx-python-0.7.3 py27_0 863 KB bioconda ipython-5.4.1 py27_2 1014 KB urllib3-1.22 py27hc3787e9_0 153 KB configparser-3.5.0 py27hc7edf1b_0 35 KB python-dateutil-2.3 py27_0 213 KB bioconda pygments-2.2.0 py27h1a556bb_0 1.3 MB terminado-0.8.1 py27_1 20 KB backports-1.0 py27hb4f9756_1 3 KB testpath-0.3.1 py27h72d81a5_0 89 KB notebook-5.4.0 py27_0 6.6 MB pyopenssl-17.5.0 py27hfda213f_0 77 KB decorator-4.2.1 py27_0 15 KB webencodings-0.5.1 py27h19a9f58_1 19 KB nbconvert-5.3.1 py27h6455e4c_0 394 KB ipykernel-4.8.2 py27_0 143 KB functools32-3.2.3.2 py27h8ceab06_1 22 KB entrypoints-0.2.3 py27hd680fb1_2 9 KB asn1crypto-0.24.0 py27_0 155 KB pip-9.0.1 py27_5 2.2 MB pyzmq-17.0.0 py27h1de35cc_0 393 KB backports_abc-0.5 py27h6972548_0 12 KB ruamel_yaml-0.15.35 py27h1de35cc_1 228 KB backports.functools_lru_cache-1.5 py27_1 9 KB scandir-1.7 py27h1de35cc_0 25 KB setuptools-38.5.1 py27_0 509 KB pyparsing-2.2.0 py27h5bb6aaf_0 94 KB tornado-5.0 py27_0 618 KB requests-2.18.4 py27h9b2b37c_1 91 KB futures-3.2.0 py27h1b80678_0 24 KB bleach-1.4.2 py27_0 31 KB bioconda kiwisolver-1.0.1 py27h9856860_0 57 KB html5lib-1.0.1 py27h5233db4_0 188 KB cycler-0.10.0 py27hfc73c78_0 13 KB singledispatch-3.4.0.3 py27he22c18d_0 15 KB jsonschema-2.6.0 py27hd9b497e_0 61 KB numpy-1.14.2 py27ha9ae307_0 3.9 MB nbformat-4.4.0 py27hddc86d0_0 136 KB pandocfilters-1.4.2 py27hed78c4e_1 12 KB pickleshare-0.7.4 py27h37e3d41_0 11 KB jupyter_client-5.2.2 py27_0 121 KB prompt_toolkit-1.0.15 py27h4a7b9c2_0 333 KB jupyter_core-4.4.0 py27h5ea6ba4_0 60 KB cython-0.27.3 py27h6429b90_0 2.6 MB ipython_genutils-0.2.0 py27h8b9a179_0 38 KB pytz-2018.3 py27_0 211 KB markupsafe-1.0 py27hd3c86fa_1 23 KB conda-4.4.11 py27_0 931 KB chardet-3.0.4 py27h2842e91_1 180 KB appnope-0.1.0 py27hb466136_0 8 KB ptyprocess-0.5.2 py27h70f6364_0 22 KB six-1.11.0 py27h7252ba3_1 21 KB pathlib2-2.3.0 py27he09da1e_0 31 KB pysocks-1.6.8 py27_0 22 KB parso-0.1.1 py27he57c4c6_0 115 KB ipaddress-1.0.19 py27_0 32 KB python.app-2 py27hf2d5e94_7 11 KB wcwidth-0.1.7 py27h817c265_0 25 KB matplotlib-2.2.0 py27hfa7797c_0 6.6 MB pycosat-0.6.3 py27h6c51c7e_0 106 KB subprocess32-3.2.7 py27h24b2887_0 38 KB htseq-0.9.1 py27_0 315 KB bioconda rseqc-2.6.4 py27_0 228 KB bioconda certifi-2018.1.18 py27_0 143 KB simplegeneric-0.8.1 py27_2 9 KB mistune-0.8.3 py27_0 52 KB pexpect-4.4.0 py27_0 70 KB pysam-0.14.0 py27_htslib1.7_2 2.0 MB bioconda jinja2-2.10 py27h70b8dc5_0 177 KB hisat2-2.1.0 py27pl5.22.0_0 6.9 MB bioconda enum34-1.1.6 py27hf475452_1 57 KB cffi-1.11.5 py27h342bebf_0 201 KB traitlets-4.3.2 py27hcf08151_0 126 KB cryptography-2.1.4 py27hdbc5e8f_0 548 KB
Total: 54.1 MB
The following NEW packages will be INSTALLED:
backports: 1.0-py27hb4f9756_1
backports.functools_lru_cache: 1.5-py27_1
backports.shutil_get_terminal_size: 1.0.0-py27hc9115de_2
backports_abc: 0.5-py27h6972548_0
bx-python: 0.7.3-py27_0 bioconda
configparser: 3.5.0-py27hc7edf1b_0
cython: 0.27.3-py27h6429b90_0
enum34: 1.1.6-py27hf475452_1
functools32: 3.2.3.2-py27h8ceab06_1
futures: 3.2.0-py27h1b80678_0
ipaddress: 1.0.19-py27_0
pathlib2: 2.3.0-py27he09da1e_0
rseqc: 2.6.4-py27_0 bioconda
scandir: 1.7-py27h1de35cc_0
singledispatch: 3.4.0.3-py27he22c18d_0
subprocess32: 3.2.7-py27h24b2887_0
The following packages will be UPDATED:
appnope: 0.1.0-py36hf537a9a_0 --> 0.1.0-py27hb466136_0
asn1crypto: 0.24.0-py36_0 --> 0.24.0-py27_0
bleach: 1.4.2-py36_0 bioconda --> 1.4.2-py27_0 bioconda
certifi: 2018.1.18-py36_0 --> 2018.1.18-py27_0
cffi: 1.11.4-py36h342bebf_0 --> 1.11.5-py27h342bebf_0
chardet: 3.0.4-py36h96c241c_1 --> 3.0.4-py27h2842e91_1
conda: 4.4.11-py36_0 --> 4.4.11-py27_0
cryptography: 2.1.4-py36h842514c_0 --> 2.1.4-py27hdbc5e8f_0
cycler: 0.10.0-py36hfc81398_0 --> 0.10.0-py27hfc73c78_0
decorator: 4.2.1-py36_0 --> 4.2.1-py27_0
entrypoints: 0.2.3-py36hd81d71f_2 --> 0.2.3-py27hd680fb1_2
hisat2: 2.1.0-py36pl5.22.0_0 bioconda --> 2.1.0-py27pl5.22.0_0 bioconda
html5lib: 1.0.1-py36h2f9c1c0_0 --> 1.0.1-py27h5233db4_0
htseq: 0.9.1-py36_0 bioconda --> 0.9.1-py27_0 bioconda
idna: 2.6-py36h8628d0a_1 --> 2.6-py27hedea723_1
ipykernel: 4.8.2-py36_0 --> 4.8.2-py27_0
ipython_genutils: 0.2.0-py36h241746c_0 --> 0.2.0-py27h8b9a179_0
jedi: 0.11.1-py36_0 --> 0.11.1-py27_0
jinja2: 2.10-py36hd36f9c5_0 --> 2.10-py27h70b8dc5_0
jsonschema: 2.6.0-py36hb385e00_0 --> 2.6.0-py27hd9b497e_0
jupyter_client: 5.2.2-py36_0 --> 5.2.2-py27_0
jupyter_core: 4.4.0-py36h79cf704_0 --> 4.4.0-py27h5ea6ba4_0
kiwisolver: 1.0.1-py36h792292d_0 --> 1.0.1-py27h9856860_0
markupsafe: 1.0-py36h3a1e703_1 --> 1.0-py27hd3c86fa_1
matplotlib: 2.2.0-py36hfa7797c_0 --> 2.2.0-py27hfa7797c_0
mistune: 0.8.3-py36_0 --> 0.8.3-py27_0
nbconvert: 5.3.1-py36h810822e_0 --> 5.3.1-py27h6455e4c_0
nbformat: 4.4.0-py36h827af21_0 --> 4.4.0-py27hddc86d0_0
notebook: 5.4.0-py36_0 --> 5.4.0-py27_0
numpy: 1.14.2-py36ha9ae307_0 --> 1.14.2-py27ha9ae307_0
pandocfilters: 1.4.2-py36h3b0b094_1 --> 1.4.2-py27hed78c4e_1
parso: 0.1.1-py36hc90e01c_0 --> 0.1.1-py27he57c4c6_0
pexpect: 4.4.0-py36_0 --> 4.4.0-py27_0
pickleshare: 0.7.4-py36hf512f8e_0 --> 0.7.4-py27h37e3d41_0
pip: 9.0.1-py36h1555ced_4 --> 9.0.1-py27_5
prompt_toolkit: 1.0.15-py36haeda067_0 --> 1.0.15-py27h4a7b9c2_0
ptyprocess: 0.5.2-py36he6521c3_0 --> 0.5.2-py27h70f6364_0
pycosat: 0.6.3-py36hee92d8f_0 --> 0.6.3-py27h6c51c7e_0
pycparser: 2.18-py36h724b2fc_1 --> 2.18-py27h0d28d88_1
pygments: 2.2.0-py36h240cd3f_0 --> 2.2.0-py27h1a556bb_0
pyopenssl: 17.5.0-py36h51e4350_0 --> 17.5.0-py27hfda213f_0
pyparsing: 2.2.0-py36hb281f35_0 --> 2.2.0-py27h5bb6aaf_0
pysam: 0.14.0-py36_htslib1.7_2 bioconda --> 0.14.0-py27_htslib1.7_2 bioconda
pysocks: 1.6.7-py36hfa33cec_1 --> 1.6.8-py27_0
python.app: 2-py36h54569d5_7 --> 2-py27hf2d5e94_7
pytz: 2018.3-py36_0 --> 2018.3-py27_0
pyzmq: 17.0.0-py36h1de35cc_0 --> 17.0.0-py27h1de35cc_0
requests: 2.18.4-py36h4516966_1 --> 2.18.4-py27h9b2b37c_1
ruamel_yaml: 0.15.35-py36h1de35cc_1 --> 0.15.35-py27h1de35cc_1
send2trash: 1.5.0-py36_0 --> 1.5.0-py27_0
setuptools: 38.4.0-py36_0 --> 38.5.1-py27_0
simplegeneric: 0.8.1-py36_2 --> 0.8.1-py27_2
six: 1.11.0-py36h0e22d5e_1 --> 1.11.0-py27h7252ba3_1
terminado: 0.8.1-py36_1 --> 0.8.1-py27_1
testpath: 0.3.1-py36h625a49b_0 --> 0.3.1-py27h72d81a5_0
tornado: 5.0-py36_0 --> 5.0-py27_0
traitlets: 4.3.2-py36h65bd3ce_0 --> 4.3.2-py27hcf08151_0
urllib3: 1.22-py36h68b9469_0 --> 1.22-py27hc3787e9_0
wcwidth: 0.1.7-py36h8c6ec74_0 --> 0.1.7-py27h817c265_0
webencodings: 0.5.1-py36h3b9701d_1 --> 0.5.1-py27h19a9f58_1
wheel: 0.30.0-py36h5eb2c71_1 --> 0.30.0-py27h677a027_1
The following packages will be DOWNGRADED:
ipython: 6.2.1-py36h3dda519_1 --> 5.4.1-py27_2
python: 3.6.4-hc167b69_1 --> 2.7.14-h138c1fe_30
python-dateutil: 2.7.0-py36_0 --> 2.3-py27_0 bioconda
询问是否继续? Proceed ([y]/n)? y
输入y以完成安装。
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