scATAC-seq 分析资料

cellranger ATAC处理fastq data

#1

https://www.jianshu.com/p/7c3a7088a250

#2

https://www.jianshu.com/p/4f61be356324

背景知识

#1 scATAC 分析流程上

https://www.jianshu.com/p/4299c02d0f8f

#2 scATAC 分析流程下

https://www.jianshu.com/p/b7592537e844

代码

#GreenleafLab/10x-scATAC-2019

https://github.com/GreenleafLab/10x-scATAC-2019/tree/master/code

#简书作者代码

#step 1

https://www.jianshu.com/p/5d778d99449f

#step 2

https://www.jianshu.com/p/1f414e5ac15c

#step 3

https://www.jianshu.com/p/04960bacb757

#step 4

https://www.jianshu.com/p/c960b9b1e10d

#seurat 分析流程

https://blog.csdn.net/u012110870/article/details/100171472

#scATAC分析神器ArchR初探-简介（1）

信息比较全面，自己在mac上安装没什么问题，linux上无法成功安装，查了一下，可能root用户安装起来表容易

https://www.jianshu.com/p/90ccb3d24322

#snapATAC 分析流程

https://www.jianshu.com/p/3e5e80c2bd8a