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keytypes(org.Hs.eg.db)支持的id包含哪些?

keytypes(org.Hs.eg.db)支持的id包含哪些?

作者: Seurat_Satija | 来源:发表于2021-10-13 23:39 被阅读0次
     library(clusterProfiler)
    
    clusterProfiler v3.18.0  For help: https://guangchuangyu.github.io/software/clusterProfiler
    
    If you use clusterProfiler in published research, please cite:
    Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.
    
    载入程辑包:‘clusterProfiler’
    
    The following object is masked from ‘package:stats’:
    
        filter
    
    > keytypes(org.Hs.eg.db)
    Error in keytypes(org.Hs.eg.db) : could not find function "keytypes"
    > library(org.Hs.eg.db)
    载入需要的程辑包:AnnotationDbi
    载入需要的程辑包:stats4
    载入需要的程辑包:BiocGenerics
    载入需要的程辑包:parallel
    
    载入程辑包:‘BiocGenerics’
    
    The following objects are masked from ‘package:parallel’:
    
        clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap,
        parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from ‘package:stats’:
    
        IQR, mad, sd, var, xtabs
    
    The following objects are masked from ‘package:base’:
    
        anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call,
        duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted,
        lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
        Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply, union,
        unique, unsplit, which.max, which.min
    
    载入需要的程辑包:Biobase
    Welcome to Bioconductor
    
        Vignettes contain introductory material; view with 'browseVignettes()'. To cite
        Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    载入需要的程辑包:IRanges
    载入需要的程辑包:S4Vectors
    
    载入程辑包:‘S4Vectors’
    
    The following object is masked from ‘package:clusterProfiler’:
    
        rename
    
    The following object is masked from ‘package:base’:
    
        expand.grid
    
    
    载入程辑包:‘IRanges’
    
    The following object is masked from ‘package:clusterProfiler’:
    
        slice
    
    The following object is masked from ‘package:grDevices’:
    
        windows
    
    
    载入程辑包:‘AnnotationDbi’
    
    The following object is masked from ‘package:clusterProfiler’:
    
        select
    
    
    > keytypes(org.Hs.eg.db)
     [1] "ACCNUM"       "ALIAS"        "ENSEMBL"      "ENSEMBLPROT"  "ENSEMBLTRANS" "ENTREZID"    
     [7] "ENZYME"       "EVIDENCE"     "EVIDENCEALL"  "GENENAME"     "GO"           "GOALL"       
    [13] "IPI"          "MAP"          "OMIM"         "ONTOLOGY"     "ONTOLOGYALL"  "PATH"        
    [19] "PFAM"         "PMID"         "PROSITE"      "REFSEQ"       "SYMBOL"       "UCSCKG"      
    [25] "UNIGENE"      "UNIPROT" 

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