linux下载安装QIIME2

#下载最新版miniconda2

wget -c https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86 64.sh

#运行安装程序

bash Miniconda2-latest-Linux-x86 64.sh

# 删除安装程序，下次你会下载新版

rm Miniconda2-latest-Linux-x86 64.sh

# 添加常用下载频道

conda config --add channels defaults

conda config --add channels conda-forge

conda config --add channels bioconda

#添加清华镜像加速下载

site=https://mirrors.tuna.tsinghua.edu. cn/anaconda

conda config --add channels ${site]/pkgs/free/

conda config --add channels $(site]/pkgs/main/

conda config --add channels ${site}/cloud/conda-forge/

conda config --add channels ${site]/pkgs/r/

conda config --add channels ${site]/cloud/bioconda/

conda config --add channels ${site}/cloud/msys2/

conda config --add channels ${site]/cloud/menpo/

conda config --add channels ${site}/cloud/pytorch/

#升级conda及相关程序

conda update conda

# 安装下载工具

conda install -y wget

# 下载QIIME2安装包

Wget https://data.qiime2.org/distro/core/qiime2-2023.2-py38-linux-conda.yml--user-agent="Mozilla/5.0 (X11;U;Linux i686;en-US;rv:1.9.0.3) Geco/2008092416 Firefox/3.0.3"--no-check-certificate

# 安装QIIME2

conda env create -n qiime2-2023.2 --file qiime2-2023.2-py38-linux-conda.yml

# 激活小环境

conda activate qiime2-2023.2

# 测试安装是否成

qiime --help