Markers used in scRNA-seq cluster identity assignment
| Cell Type | Transcript |
|---|---|
| B Cells | Cd19, Cd22, Ms4a1, Ptprc |
| T Cells | Cd3d, Cd3e, Cd3g, Cd8a, Cd4, Ptprc |
| MuSCs | Pax7, Myod1, Vcam1, Sdc4 |
| FAPs | Ly6a, Ly6e, Pdgfra, Dcn |
| ITGA7+VCAM1- Cells | Itga7, Rgs5, Myl9 |
| Macrophages | Itgam, Csf1r, Adgre1, Itgb1 |
| Neutrophils | Itgam, Cd14, S100a8, S100a9 |
| Endothelial Cells | Pecam1, Cdh5, Tek, Kdr |
| Scx+ Cells | Scx, Tnmd, Col1a1, Tnc |
| Glial Cells | Plp1, Kcna1, S100b, Mbp |
Reference:
https://doi.org/10.1016/j.molcel.2019.02.026
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