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2020-09-22常用植物基因组数据库

2020-09-22常用植物基因组数据库

作者: 阿乜太帅 | 来源:发表于2020-09-22 07:55 被阅读0次
    DB name Resources Plants URL
    Genbank Genomic Various plant species https://www.ncbi.nlm.nih.gov/genbank/
    EMBL Genomic Various plant species https://www.ebi.ac.uk/
    DDBJ Genomic Various plant species http://www.ddbj.nig.ac.jp/
    UniProt Protein and functional Various plant species http://www.uniprot.org/
    NCBI Genomic Various plant species https://www.ncbi.nlm.nih.gov/
    GOLD Genomic, metagenomics, transcriptomic Various plant species https://gold.jgi.doe.gov/cgi-bin/GOLD/bin/gold.cgi
    Phytozom Genomic 92 assembled and annotated plant species https://phytozome.jgi.doe.gov/pz/portal.html
    Plantgdb Genomic, transcriptomic 27 assembled and annotated plant species http://www.plantgdb.org/
    Sol Genomic 11 Solanaceae species https://solgenomics.net/
    Gramene Genomic, genetic markers, QTLs 53 plant species http://www.gramene.org/
    MaizeGCB Genomic, annotations, tool host Zea mays https://www.maizegdb.org/
    Tair Genetic and molecular biology data Arabidopsis thaliana https://www.arabidopsis.org/
    CottonGE Genomic, Genetic and breeding resources 49 Gossypium species https://www.arabidopsis.org/
    PLEXdb Gene expression 14 plant species http://www.plantgdb.org/prj/PLEXdb/
    RicePro Gene expression Oryza sativa http://ricexpro.dna.affrc.go.jp/
    CerealsDB Genetic markers Triticum aestivum http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php
    PeanutBa Genome, MAS, QTLs, Germplasm Arachis hypogaea https://peanutbase.org/
    SoyKb Genetic markers, genomic resources Glycine max http://soykb.org/
    SoyBase Genetic markers, QTLs, genomic resources G. max https://soybase.org/
    PGDBj Genetic markers, QTLs, genomic resources 80 plant species http://pgdbj.jp/
    SNP-Seek Genotype, Phenotype and Variety information O. sativa http://snp-seek.irri.org/
    GrainGene Genome, Genetic markers, QTLs, genomic resources T. aestivum, Hordeum vulgare, Secale cereale, Avena sativa etc https://wheat.pw.usda.gov/GG3/
    ASRP small RNA A. thaliana http://asrp.danforthcenter.org/
    CSRDB small RNA Z. mays http://sundarlab.ucdavis.edu/smrnas/
    BrassicaIn Genomic 7 Brassica species http://brassica.info/
    BRAD Genomics, Genetic Markers and Maps Brassica http://brassicadb.org/brad/
    Ensembl Plants Genomic 45 plant species http://plants.ensembl.org/index.html
    Ipomoea Genome Hub Genomic, EST Ipomoea batatas https://ipomoea-genome.org/
    PGSC Genomic, annotation S. tuberosum, S.chacoense http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml
    GDR Genomics, Genetics, breeding Rosaceae https://www.rosaceae.org/analysis/266
    HWG Genomics, Transcriptomics, Genetic Markers Forest trees and woody plants https://www.hardwoodgenomics.org/

    原始文献: Current Strategies of Polyploid Plant Genome Sequence Assembly

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