宏基因组分析5-宏基因组注释(prokka)

http://www.vicbioinformatics.com/software.prokka.shtml
https://github.com/tseemann/prokka

安装

cpan的源也在国外，下载速度很慢，把cpan的源改成国内源。https://blog.csdn.net/zhao1949/article/details/51858015

sudo apt-get install libdatetime-perl libxml-simple-perl libdigest-md5-perl git default-jre bioperl
sudo cpan Bio::Perl
cd /home/llt/software
git clone https://github.com/tseemann/prokka.git
cd /home/llt/software/prokka/prokka --setupdb

cpan的源也在国外，下载速度很慢，把cpan的源改成国内源。

使用

/home/llt/software/prokka/bin/prokka /home/llt/experiment/data/clean/subsamble_10m/trim/assembly/final.contigs.fa --outdir prokka_annotation --prefix metagG --metagenome --kingdom Archaea --cpus 4