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如何下载KEGG某一pathway的genelist

如何下载KEGG某一pathway的genelist

作者: 落寞的橙子 | 来源:发表于2020-01-01 03:39 被阅读0次

参考网站

笨方法可以去KEGG官网复制然后分列提取

library("KEGGREST")
names <- keggGet("hsa05215")[[1]]$GENE
namesodd <-  names[seq(0,length(names),2)]
namestrue <- gsub("\\;.*","",namesodd)
write.csv(namestrue, file = "hsa05215",quote = F, row.names = F)
names <- keggGet("hsa04932")[[1]]$GENE
namesodd <-  names[seq(0,length(names),2)]
namestrue <- gsub("\\;.*","",namesodd)
write.csv(namestrue, file = "hsa04932_Non-alcoholic fatty liver disease (NAFLD)",quote = F, row.names = F)

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