picard产生dict文件

作者: 苏牧传媒 | 来源:发表于2019-01-24 16:51 被阅读12次

java -jar /home/shen/biosoft/picard.jar CreateSequenceDictionary \

R=reference.fasta \

O=reference.dict

This produces a SAM-style header file describing the contents of our fasta file.

> cat Homo_sapiens_assembly18.dict

@HD VN:1.0 SO:unsorted

@SQ SN:chrM LN:16571 UR:file:/humgen/gsa-scr1/depristo/dev/GenomeAnalysisTK/trunk/Homo_sapiens_assembly18.fasta M5:d2ed829b8a1628d16cbeee88e88e39eb

@SQ SN:chr1 LN:247249719 UR:file:/humgen/gsa-scr1/depristo/dev/GenomeAnalysisTK/trunk/Homo_sapiens_assembly18.fasta M5:9ebc6df9496613f373e73396d5b3b6b6

@SQ SN:chr2 LN:242951149 UR:file:/humgen/gsa-scr1/depristo/dev/GenomeAnalysisTK/trunk/Homo_sapiens_assembly18.fasta M5:b12c7373e3882120332983be99aeb18d

@SQ SN:chr3 LN:199501827 UR:file:/humgen/gsa-scr1/depristo/dev/GenomeAnalysisTK/trunk/Homo_sapiens_assembly18.fasta M5:0e48ed7f305877f66e6fd4addbae2b9a