第二：Coverage Analysis
第三：Diagnostics and Quality Control
AccumulateVariantCallingMetrics (Picard)
CalculateReadGroupChecksum (Picard)
ClusterCrosscheckMetrics (Picard)
CollectAlignmentSummaryMetrics (Picard)
CollectBaseDistributionByCycle (Picard)
CollectBaseDistributionByCycleSpark
CollectHiSeqXPfFailMetrics (Picard)
CollectIndependentReplicateMetrics (Picard)
CollectInsertSizeMetrics (Picard)
CollectJumpingLibraryMetrics (Picard)
CollectMultipleMetrics (Picard)
CollectQualityYieldMetrics (Picard)
CollectQualityYieldMetricsSpark
CollectSequencingArtifactMetrics (Picard)
CollectTargetedPcrMetrics (Picard)
CollectVariantCallingMetrics (Picard)
CollectWgsMetricsWithNonZeroCoverage (Picard)
ConvertSequencingArtifactToOxoG (Picard)
CrosscheckFingerprints (Picard)
CrosscheckReadGroupFingerprints (Picard)
EstimateLibraryComplexity (Picard)
QualityScoreDistribution (Picard)
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