法一:
安装:
sudo apt install mysql-client-core-5.7
sudo apt install mariadb-client-core-10.1
下载:
mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -D mm10 -e 'select chrom,chromStart,chromEnd,name from nestedRepeats where repClass="LINE" ' > line1.bed
查看:
![](https://img.haomeiwen.com/i13325312/29f065718e5bc667.png)
ref: https://www.biostars.org/p/127759/
法二:
![](https://img.haomeiwen.com/i13325312/c4efc7e74cc2c37e.png)
查看:
![](https://img.haomeiwen.com/i13325312/acc3ec555f6f1110.png)
ref:UCSC Genome Browser Public Support › LINE
比较下选择第二个mm10:
![](https://img.haomeiwen.com/i13325312/14d453f78c290c05.png)
验证:
![](https://img.haomeiwen.com/i13325312/b413ec5c57615924.png)
![](https://img.haomeiwen.com/i13325312/35896501522ea52a.png)
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