- R: You can find easy-to-use installers at https://www.r-project.org/
- RStudio: You can find easy-to-use installers at https://www.rstudio.com/products/rstudio/download/#download
- R packages: To install these packages, type in these commands in R:
| R package | Command |
|---|---|
| Bioconductor | source("https://bioconductor.org/biocLite.R")biocLite() |
| CAGEr | biocLite("CAGEr") |
| BSgenome Hsapiens UCSC hg38 | biocLite("BSgenome.Hsapiens.UCSC.hg38") |
| Heatmaps | biocLite("heatmaps") |
| GenomicRanges | biocLite("GenomicRanges") |
| IRanges | biocLite("IRanges") |
| Biostrings | biocLite("Biostrings”) |
| Biobase | biocLite("Biobase”) |
| RTopper | biocLite("RTopper") |
| GSEABase | biocLite("GSEABase") |
| org.Hs.eg.db | biocLite("org.Hs.eg.db”) |
| KEGG.db | biocLite("KEGG.db") |
| RColorBrewer | biocLite("RColorBrewer") |
| gplots | biocLite("gplots") |
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