安装软件的哀伤，除了bioconda，可能还需要学会Docker

1.docker安装

czh@ubuntu:~$ wget -qO- https://get.docker.com/ | sh
If you would like to use Docker as a non-root user, you should now consider

adding your user to the "docker" group with something like:

sudo usermod -aG docker czh

Remember that you will have to log out and back in for this to take effect!

czh@ubuntu:~$ sudo usermod -aG docker czh

# 启动Docker服务
sudo service docker start
# 关闭Docker服务
sudo service docker stop

2.docker使用

#启动docker后台服务
czh@ubuntu:~$ sudo service docker start
#测试运行hello-world
czh@ubuntu:~$ sudo docker run hello-world

#关闭开机自动启动
czh@ubuntu:~$ sudo systemctl disable docker.service docker.socket

#搜索镜像orthomcl
czh@ubuntu:~$ sudo docker search orthomcl
czh@ubuntu:~$ sudo docker search orthomcl
NAME                        DESCRIPTION                             STARS               OFFICIAL            AUTOMATED
jasonkwan/orthomcl_docker   Docker image to run OrthoMCL            1                                       [OK]
granek/orthomcl             A containerized version of OrthoMCL.    0                                       [OK]
ivasilyev/orthomcl-mysql                                            0                                       
pakorhon/orthomcl           A python wrapper to OrthoMCL pipeline   0                                       [OK]
taniguti/orthomcl                                                   0                                       
#安装指定镜像
czh@ubuntu:~$ sudo docker pull granek/orthomcl
Using default tag: latest
latest: Pulling from granek/orthomcl
Digest: sha256:799698d67b8bdd5c5bcd195508eeed594026c3dfaf36dcd10bc311ed56cfc7d4
Status: Image is up to date for granek/orthomcl:latest
docker.io/granek/orthomcl:latest

#启动镜像
czh@ubuntu:~$ sudo docker run --name=orthomcl -it granek/orthomcl 
root@e4f9238c7e7a:/# 

#进入镜像
czh@ubuntu:~$ sudo docker start orthomcl
orthomcl
czh@ubuntu:~$ sudo docker attach orthomcl
root@0b057ce3474a:/# 

#退出镜像
root@d4172cfb9784:/# exit
exit

#查看容器状态
czh@ubuntu:~$ sudo docker ps -a

#启动一个容器，并将主机上的/home/czh/Desktop/myDocker挂载到容器granek/orthomcl中的data文件夹，达到容器和主机文件共享的目的。
czh@ubuntu:~$ docker run --name orthomcl1 -it  -v /home/czh/Desktop/myDocker:/data granek/orthomcl /bin/bash

3.docker安装orthomcl

依然失败，不玩了，认怂！转向orthofinder了。对perl和MySQL不熟悉，实在没办法顺利解决安装过程中的报错信息。