2021-11-23集群安装R包GOstats

安装R包GOstats，出现以下错误：

ERROR: dependency ‘httr’ is not available for package ‘KEGGREST’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/KEGGREST’

ERROR: dependency ‘KEGGREST’ is not available for package ‘AnnotationDbi’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/AnnotationDbi’

ERROR: dependency ‘AnnotationDbi’ is not available for package ‘GO.db’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/GO.db’

ERROR: dependencies ‘AnnotationDbi’, ‘httr’ are not available for package ‘annotate’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/annotate’

ERROR: dependency ‘AnnotationDbi’ is not available for package ‘AnnotationForge’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/AnnotationForge’

ERROR: dependencies ‘annotate’, ‘AnnotationDbi’ are not available for package ‘GSEABase’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/GSEABase’

ERROR: dependencies ‘AnnotationDbi’, ‘annotate’ are not available for package ‘genefilter’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/genefilter’

ERROR: dependencies ‘AnnotationDbi’, ‘GSEABase’, ‘genefilter’, ‘annotate’ are not available for package ‘Category’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/Category’

ERROR: dependencies ‘Category’, ‘AnnotationDbi’, ‘GO.db’, ‘annotate’, ‘AnnotationForge’ are not available for package ‘GOstats’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/GOstats’

尝试安装“httr”

Installing package(s) 'httr'

also installing the dependency ‘openssl’

报错：

Error: package or namespace load failed for ‘openssl’ in dyn.load(file, DLLpath = DLLpath, ...):

unable to load shared object '/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/00LOCK-openssl/00new/openssl/libs/openssl.so':

  /public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/00LOCK-openssl/00new/openssl/libs/openssl.so: undefined symbol: EVP_CIPHER_CTX_block_size

Error: loading failed

Execution halted

ERROR: loading failed

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/openssl’

ERROR: dependency ‘openssl’ is not available for package ‘httr’

* removing ‘/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/httr’

始终解决不了这个bug

Error: package or namespace load failed for ‘openssl’ in dyn.load(file, DLLpath = DLLpath, ...):

unable to load shared object '/public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/00LOCK-openssl/00new/openssl/libs/openssl.so':

  /public/home/wangyantao/soft/anaconda3/envs/r-4.1/lib/R/library/00LOCK-openssl/00new/openssl/libs/openssl.so: undefined symbol: EVP_CIPHER_CTX_block_size

使用conda install r-package 进行R包的安装，直接安装GOstats还是不行，

现在尝试把报错的那些附属包先安装上。

使用conda install r-package 或者 在R下使用BiocManager::install("package")

将GOstats中缺少的依赖包全部安装：

1、安装openssl

conda install r-openssl

2、安装httr

conda install r-httr

3、安装KEGGREST，安装失败

conda install r-KEGGREST

4、进入R中进行安装KEGGREST

BiocManager::install("KEGGREST")

5、安装AnnotationDbi

BiocManager::install("AnnotationDbi")

6、安装GO.db

BiocManager::install("GO.db")

7、安装annotate

BiocManager::install("annotate")

依次安装

BiocManager::install("AnnotationForge")

BiocManager::install("GSEABase")

BiocManager::install("genefilter")

BiocManager::install("Category")

BiocManager::install("GOstats")

安装成功！