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一、综合性基因组数据库

1、NCBI    Assembly

    目前最常用的综合性基因组数据库，没有之一（毕竟 NCBI ~）

    网址：[https://www.ncbi.nlm.nih.gov/assembly/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fassembly%2F)

2、CNGB

    中国国家基因库生命大数据平台

    网址：[https://db.cngb.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fdb.cngb.org%2F)

3、GigaDB

    网址：[http://gigadb.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fgigadb.org%2F)

二、动物基因组数据库

1、Ensembl 系列

    Ensembl：    [http://asia.ensembl.org/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Fasia.ensembl.org%2Findex.html)

    EnsemblMetazoa：    [http://metazoa.ensembl.org/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Fmetazoa.ensembl.org%2Findex.html)

    EnsemblProtists:    [http://protists.ensembl.org/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Fprotists.ensembl.org%2Findex.html)

2、UCSC

    网址：[http://genome-asia.ucsc.edu/cgi-bin/hgGateway?redirect=manual&source=genome.ucsc.edu](https://links.jianshu.com/go?to=http%3A%2F%2Fgenome-asia.ucsc.edu%2Fcgi-bin%2FhgGateway%3Fredirect%3Dmanual%26source%3Dgenome.ucsc.edu)

三、植物基因组数据库

1、EnsemblPlants

    网址：[http://plants.ensembl.org/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Fplants.ensembl.org%2Findex.html)

2、JGI-Phytozome

    网址：[https://phytozome.jgi.doe.gov/pz/portal.html](https://links.jianshu.com/go?to=https%3A%2F%2Fphytozome.jgi.doe.gov%2Fpz%2Fportal.html)

3、PlantGDB

    网址：[http://www.plantgdb.org/    ](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.plantgdb.org%2F)（ps：这个是官方网址，但好像有点问题。。。）

    网址2：[https://goblinp.luddy.indiana.edu/](https://links.jianshu.com/go?to=https%3A%2F%2Fgoblinp.luddy.indiana.edu%2F)

四、微生物基因组数据库

0、MicrobesOnline

    微生物综合性基因组数据库

    网址：[http://www.microbesonline.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.microbesonline.org%2F)

1、真菌基因组数据库

    1.1、EnsemblFungi

        网址：[http://fungi.ensembl.org/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Ffungi.ensembl.org%2Findex.html)

    1.2、JGI-Mycocosm

        网址：[https://mycocosm.jgi.doe.gov/mycocosm/home](https://links.jianshu.com/go?to=https%3A%2F%2Fmycocosm.jgi.doe.gov%2Fmycocosm%2Fhome)

2、细菌基因组数据库

    2.1、EnsemblBacteria

        网址：[http://bacteria.ensembl.org/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Fbacteria.ensembl.org%2Findex.html)

    2.2、JGI-IGM/M

        网址：[https://img.jgi.doe.gov/](https://links.jianshu.com/go?to=https%3A%2F%2Fimg.jgi.doe.gov%2F)

五、特殊物种基因组数据库

0、illumina    iGenomes

        常见物种各版本基因组数据下载汇总

        网址：[https://support.illumina.com/sequencing/sequencing_software/igenome.html](https://links.jianshu.com/go?to=https%3A%2F%2Fsupport.illumina.com%2Fsequencing%2Fsequencing_software%2Figenome.html)

1、植物

        模式植物及农作物    Gramene：[http://www.gramene.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.gramene.org%2F)

        拟南芥    Arabidopsis thaliana    TAIR

                    AIR：    [http://www.arabidopsis.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.arabidopsis.org%2F)

                    SIGnAL：    [http://signal.salk.edu/](https://links.jianshu.com/go?to=http%3A%2F%2Fsignal.salk.edu%2F)

                    RARGE：    [http://rarge.psc.riken.jp/](https://links.jianshu.com/go?to=http%3A%2F%2Frarge.psc.riken.jp%2F)

        水稻    rice    Nipponbare    ZS97 and MH63

                    Rice Genome Annotation Project：    [http://rice.plantbiology.msu.edu/](https://links.jianshu.com/go?to=http%3A%2F%2Frice.plantbiology.msu.edu%2F)

                    RAP-DB：    [http://rapdb.dna.affrc.go.jp/](https://links.jianshu.com/go?to=http%3A%2F%2Frapdb.dna.affrc.go.jp%2F)

                    Rice Information GateWay (RIGW)：    [http://rice.hzau.edu.cn/rice/](https://links.jianshu.com/go?to=http%3A%2F%2Frice.hzau.edu.cn%2Frice%2F)

                    国家水稻数据中心：    [http://www.ricedata.cn](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.ricedata.cn)

        麦类作物    GrainGenes：[https://wheat.pw.usda.gov](https://links.jianshu.com/go?to=https%3A%2F%2Fwheat.pw.usda.gov%2F)

                            URGI：[http://wheat-urgi.versailles.inra.fr/](https://links.jianshu.com/go?to=http%3A%2F%2Fwheat-urgi.versailles.inra.fr%2F)

        莴苣（生菜）    Lettuce Genome Resource ：[http://lgr.genomecenter.ucdavis.edu/Home.php](https://links.jianshu.com/go?to=http%3A%2F%2Flgr.genomecenter.ucdavis.edu%2FHome.php)

        蔷薇科    Genome Database for Rosaceae（GDR）：[https://www.rosaceae.org](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.rosaceae.org)

                    （常见的如：玫瑰、苹果、梨、杏、李、草莓、树莓。。。）

        大豆    SoyBase：[https://www.soybase.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.soybase.org%2F)

        豆类    Pulse Crop Database（PCD）：[https://www.pulsedb.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.pulsedb.org%2F)

        玉米    MazieGDB：[https://www.maizegdb.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.maizegdb.org%2F)

        柑橘属    Citrus Genome Database：[https://www.citrusgenomedb.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.citrusgenomedb.org%2F)

        甜橙    Orange (Citrus sinensis) Genome Annotation Project：[http://citrus.hzau.edu.cn/orange/](https://links.jianshu.com/go?to=http%3A%2F%2Fcitrus.hzau.edu.cn%2Forange%2F)

        越橘属    Genome Database for Vaccinium：[https://www.vaccinium.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.vaccinium.org%2F)

        葫芦科    Cucurbit Genomics Database：[http://cucurbitgenomics.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fcucurbitgenomics.org%2F)

                    （常见的如：葫芦(瓠瓜)、南瓜、黄瓜、西葫芦、西瓜。。。）

        茄科    SOL genomics network：[https://solgenomics.net/](https://links.jianshu.com/go?to=https%3A%2F%2Fsolgenomics.net%2F)

                    （常见的如：烟草、曼陀罗、番茄、枸杞、茄、辣椒。。。）

        芸薹属    Brassica Database：[http://brassicadb.cn/](https://links.jianshu.com/go?to=http%3A%2F%2Fbrassicadb.cn%2F%23%2F)

        杨柳类    AspenDB：[http://aspendb.uga.edu/](https://links.jianshu.com/go?to=http%3A%2F%2Faspendb.uga.edu%2F)

        硬木类    Hardwood Genomics Project：[https://www.hardwoodgenomics.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.hardwoodgenomics.org%2F)

        挪威云杉    Congenie：[http://congenie.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fcongenie.org%2F)

        芭蕉类    Banana Genome Hub：[http://banana-genome.cirad.fr](https://links.jianshu.com/go?to=http%3A%2F%2Fbanana-genome.cirad.fr)

        棉花    CottonGen：[https://www.cottongen.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.cottongen.org%2F)

        可可    Cacao Genome Database：[https://www.cacaogenomedb.org/](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.cacaogenomedb.org%2F)

        猕猴桃    Kiwifruit Genome Database：[http://bioinfo.bti.cornell.edu/cgi-bin/kiwi/home.cgi](https://links.jianshu.com/go?to=http%3A%2F%2Fbioinfo.bti.cornell.edu%2Fcgi-bin%2Fkiwi%2Fhome.cgi)

        茶树    Tea Plant Information Archive：[http://tpia.teaplants.cn/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Ftpia.teaplants.cn%2Findex.html)

                    Tea Plant Genome Database：[http://eplant.njau.edu.cn/tea/index.html](https://links.jianshu.com/go?to=http%3A%2F%2Feplant.njau.edu.cn%2Ftea%2Findex.html)

2、动物

        小鼠    Mouse Genome Informatics：[http://www.informatics.jax.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.informatics.jax.org%2F)

        大鼠    Rat Genome Database（RGD）：[http://rgd.mcw.edu/](https://links.jianshu.com/go?to=http%3A%2F%2Frgd.mcw.edu%2F)

        果蝇    FlyBase：[http://flybase.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fflybase.org%2F)

        斑马鱼    The Zebrafish Information Network（ZFIN）：[http://zfin.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fzfin.org%2F)

        线虫   WormBase：[https://www.wormbase.org](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.wormbase.org)

        非洲爪蟾    XenMine：[http://www.xenmine.org/xenmine/begin.do](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.xenmine.org%2Fxenmine%2Fbegin.do)

        疟原虫    PlasmoDB：[https://plasmodb.org](https://links.jianshu.com/go?to=https%3A%2F%2Fplasmodb.org)

        牛    BGD：[http://bovinegenome.org](https://links.jianshu.com/go?to=http%3A%2F%2Fbovinegenome.org)

        昆虫    InsectBase：[http://www.insect-genome.com](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.insect-genome.com%2F)

3、微生物

        大肠杆菌    EcoCyc：[https://ecocyc.org/links.shtml](https://links.jianshu.com/go?to=https%3A%2F%2Fecocyc.org%2Flinks.shtml)

        酵母菌    The *Saccharomyces* Genome Database (SGD)：[https://www.yeastgenome.org](https://links.jianshu.com/go?to=https%3A%2F%2Fwww.yeastgenome.org)

        念珠菌    *Candida* Genome Database：[http://www.candidagenome.org/](https://links.jianshu.com/go?to=http%3A%2F%2Fwww.candidagenome.org%2F)

4、其他

        植物+作物寄生虫    URGI：[http://urgi.versailles.inra.fr/Species    ](https://links.jianshu.com/go?to=http%3A%2F%2Furgi.versailles.inra.fr%2FSpecies)（）

文章参考：

《【收藏】常用的基因组数据库汇总》链接：http://www.360doc.com/content/18/0127/20/19913717_725596003.shtml

《数据库》链接：http://www.360doc.com/content/18/0803/15/29780055_775410765.shtml

《植物基因组数据库》链接：https://www.jianshu.com/p/3b3f332ac3e2

《基因组数据库-一个物种的官网》链接：https://www.plob.org/article/6674.html

作者：枫狂灬呆子
链接：https://www.jianshu.com/p/29202d721ef4
来源：简书
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