题目: Identification of hub‐methylated differentially expressed genes in patients with gestational diabetes mellitus by multi‐omic WGCNA basing epigenome‐wide and transcriptome‐wide profiling
DOI: 10.1002/jcb.29584
数据来源: GEO: GSE70493;GSE70494
样本:
GSE70493:mRNA数据,32GDM和31对照
GSE70494:82个DNA甲基化数据,41GDM和41对照
分析方法:
WGCNA: 使用GSE70493中前25%变异数据分析
Cytoscape-ClueGo: 富集分析
GEO2R:GEO在线分析工具分析差异基因和差异甲基化基因
PCR: 来自10GDM和10对照的胎盘进行验证
GSEA富集分析: 根据基因表达量(平均表达量)区分低表达和高表达-单基因GSEA分析
文章数据:
1.分析流程图(比较关注如何和甲基化结合起来)
2.WGCNA分析结果(β值取7-未达到0.8,黑色模块与GDM相关-相关性-0.28)
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3.黑色模块富集分析结果
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4.hub基因、差异基因、差异甲基化基因
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5.验证结果
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6.GSEA分析结果
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