pip install scanpy

Collecting scanpy
  Using cached scanpy-1.8.1-py3-none-any.whl (2.0 MB)
Requirement already satisfied: matplotlib>=3.1.2 in ./.local/lib/python3.8/site-packages (from scanpy) (3.4.3)
Collecting scikit-learn>=0.22
  Downloading scikit_learn-0.24.2-cp38-cp38-manylinux2010_x86_64.whl (24.9 MB)
     |████████████████████████████████| 24.9 MB 39 kB/s s eta 0:00:01     |███████████████████████████████▏| 24.3 MB 11.8 MB/s eta 0:00:01
Requirement already satisfied: packaging in /usr/local/lib/python3.8/dist-packages (from scanpy) (21.0)
Requirement already satisfied: numpy>=1.17.0 in ./.local/lib/python3.8/site-packages (from scanpy) (1.21.2)
Collecting statsmodels>=0.10.0rc2
  Downloading statsmodels-0.12.2-cp38-cp38-manylinux1_x86_64.whl (9.4 MB)
     |████████████████████████████████| 9.4 MB 74.6 MB/s eta 0:00:01
Processing ./.cache/pip/wheels/0e/63/be/1333921ddb5d249efe6db671c36608e46593e018994c3be11d/sinfo-0.3.4-py3-none-any.whl
Requirement already satisfied: scipy>=1.4 in ./.local/lib/python3.8/site-packages (from scanpy) (1.7.1)
Processing ./.cache/pip/wheels/95/85/b7/b4b7040e49367b6d1505d7e8fb57e3e79b22fa6ac26f72520b/umap_learn-0.5.1-py3-none-any.whl
Collecting h5py>=2.10.0
  Using cached h5py-3.4.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB)
Collecting anndata>=0.7.4
  Using cached anndata-0.7.6-py3-none-any.whl (127 kB)
Collecting tables
  Downloading tables-3.6.1-cp38-cp38-manylinux1_x86_64.whl (4.3 MB)
     |████████████████████████████████| 4.3 MB 21.6 MB/s eta 0:00:01
Collecting numba>=0.41.0
  Downloading numba-0.54.0-cp38-cp38-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.5 MB)
     |████████████████████████████████| 3.5 MB 24.2 MB/s eta 0:00:01
Collecting seaborn
  Downloading seaborn-0.11.2-py3-none-any.whl (292 kB)
     |████████████████████████████████| 292 kB 69.6 MB/s eta 0:00:01
Requirement already satisfied: pandas>=0.21 in ./.local/lib/python3.8/site-packages (from scanpy) (1.3.2)
Collecting tqdm
  Using cached tqdm-4.62.2-py2.py3-none-any.whl (76 kB)
Collecting patsy
  Downloading patsy-0.5.1-py2.py3-none-any.whl (231 kB)
     |████████████████████████████████| 231 kB 27.3 MB/s eta 0:00:01
Collecting joblib
  Downloading joblib-1.0.1-py3-none-any.whl (303 kB)
     |████████████████████████████████| 303 kB 26.9 MB/s eta 0:00:01
Collecting networkx>=2.3
  Using cached networkx-2.6.2-py3-none-any.whl (1.9 MB)
Collecting natsort
  Using cached natsort-7.1.1-py3-none-any.whl (35 kB)
Requirement already satisfied: pillow>=6.2.0 in ./.local/lib/python3.8/site-packages (from matplotlib>=3.1.2->scanpy) (8.3.1)
Requirement already satisfied: cycler>=0.10 in ./.local/lib/python3.8/site-packages (from matplotlib>=3.1.2->scanpy) (0.10.0)
Requirement already satisfied: kiwisolver>=1.0.1 in ./.local/lib/python3.8/site-packages (from matplotlib>=3.1.2->scanpy) (1.3.1)
Requirement already satisfied: pyparsing>=2.2.1 in /usr/local/lib/python3.8/dist-packages (from matplotlib>=3.1.2->scanpy) (2.4.7)
Requirement already satisfied: python-dateutil>=2.7 in /usr/local/lib/python3.8/dist-packages (from matplotlib>=3.1.2->scanpy) (2.8.2)
Collecting threadpoolctl>=2.0.0
  Downloading threadpoolctl-2.2.0-py3-none-any.whl (12 kB)
Collecting stdlib-list
  Using cached stdlib_list-0.8.0-py3-none-any.whl (63 kB)
Processing ./.cache/pip/wheels/c7/0d/f8/e89d09e0c7419141e444bd59072cc195df4a88785c1052834b/pynndescent-0.5.4-py3-none-any.whl
Collecting xlrd<2.0
  Using cached xlrd-1.2.0-py2.py3-none-any.whl (103 kB)
Collecting numexpr>=2.6.2
  Downloading numexpr-2.7.3-cp38-cp38-manylinux2010_x86_64.whl (473 kB)
     |████████████████████████████████| 473 kB 22.7 MB/s eta 0:00:01
Collecting llvmlite<0.38,>=0.37.0rc1
  Downloading llvmlite-0.37.0-cp38-cp38-manylinux2014_x86_64.whl (26.3 MB)
     |████████████████████████████████| 26.3 MB 77 kB/s s eta 0:00:01    |█▊                              | 1.4 MB 17.0 MB/s eta 0:00:02
Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (from numba>=0.41.0->scanpy) (45.2.0)
Requirement already satisfied: pytz>=2017.3 in ./.local/lib/python3.8/site-packages (from pandas>=0.21->scanpy) (2021.1)
Requirement already satisfied: six in /usr/lib/python3/dist-packages (from patsy->scanpy) (1.14.0)
ERROR: numba 0.54.0 has requirement numpy<1.21,>=1.17, but you'll have numpy 1.21.2 which is incompatible.
Installing collected packages: joblib, threadpoolctl, scikit-learn, patsy, statsmodels, stdlib-list, sinfo, llvmlite, numba, pynndescent, umap-learn, h5py, xlrd, natsort, anndata, numexpr, tables, seaborn, tqdm, networkx, scanpy
Successfully installed anndata-0.7.6 h5py-3.4.0 joblib-1.0.1 llvmlite-0.37.0 natsort-7.1.1 networkx-2.6.2 numba-0.54.0 numexpr-2.7.3 patsy-0.5.1 pynndescent-0.5.4 scanpy-1.8.1 scikit-learn-0.24.2 seaborn-0.11.2 sinfo-0.3.4 statsmodels-0.12.2 stdlib-list-0.8.0 tables-3.6.1 threadpoolctl-2.2.0 tqdm-4.62.2 umap-learn-0.5.1 xlrd-1.2.0
Note: you may need to restart the kernel to use updated packages.