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R package:Seurat的安装

R package:Seurat的安装

作者: 佳名 | 来源:发表于2020-03-22 08:32 被阅读0次
    #BiocManager::install("multtest")
    install.packages("Seurat")
    library("Seurat")
    
    No non-system installation of Python could be found.
    Would you like to download and install Miniconda?
    Miniconda is an open source environment management system for Python.
    See https://docs.conda.io/en/latest/miniconda.html for more details.
    
    Would you like to install Miniconda? [Y/n]: y
    
    ## Package Plan ##
    
      environment location: C:\Users\LUOZHI~1\AppData\Local\R-MINI~1
    
      added / updated specs:
        - conda
    
    
    The following packages will be downloaded:
    
        package                    |            build
        ---------------------------|-----------------
        certifi-2020.4.5.1         |           py37_0         156 KB
        conda-4.8.3                |           py37_0         2.8 MB
        conda-package-handling-1.6.1|   py37h62dcd97_0         612 KB
        cryptography-2.9.2         |   py37h7a1dbc1_0         523 KB
        idna-2.9                   |             py_1          49 KB
        openssl-1.1.1g             |       he774522_0         4.8 MB
        pip-20.0.2                 |           py37_3         1.7 MB
        pycparser-2.20             |             py_0          92 KB
        requests-2.23.0            |           py37_0          93 KB
        setuptools-47.1.1          |           py37_0         538 KB
        six-1.15.0                 |             py_0          13 KB
        sqlite-3.31.1              |       h2a8f88b_1         804 KB
        tqdm-4.46.0                |             py_0          60 KB
        vs2015_runtime-14.16.27012 |       hf0eaf9b_2         1.2 MB
        zlib-1.2.11                |       h62dcd97_4         113 KB
        ------------------------------------------------------------
                                               Total:        13.5 MB
    
    The following NEW packages will be INSTALLED:
    
      zlib               pkgs/main/win-64::zlib-1.2.11-h62dcd97_4
    
    The following packages will be REMOVED:
    
      asn1crypto-1.3.0-py37_0
    
    The following packages will be UPDATED:
    
      certifi                                 2019.11.28-py37_0 --> 2020.4.5.1-py37_0
      conda                                        4.8.2-py37_0 --> 4.8.3-py37_0
      conda-package-han~                   1.6.0-py37h62dcd97_0 --> 1.6.1-py37h62dcd97_0
      cryptography                           2.8-py37h7a1dbc1_0 --> 2.9.2-py37h7a1dbc1_0
      idna                    pkgs/main/win-64::idna-2.8-py37_0 --> pkgs/main/noarch::idna-2.9-py_1
      openssl                                 1.1.1d-he774522_4 --> 1.1.1g-he774522_0
      pip                                         20.0.2-py37_1 --> 20.0.2-py37_3
      pycparser          pkgs/main/win-64::pycparser-2.19-py37~ --> pkgs/main/noarch::pycparser-2.20-py_0
      requests                                    2.22.0-py37_1 --> 2.23.0-py37_0
      setuptools                                  45.2.0-py37_0 --> 47.1.1-py37_0
      six                   pkgs/main/win-64::six-1.14.0-py37_0 --> pkgs/main/noarch::six-1.15.0-py_0
      sqlite                                  3.31.1-he774522_0 --> 3.31.1-h2a8f88b_1
      tqdm                                          4.42.1-py_0 --> 4.46.0-py_0
      vs2015_runtime                     14.16.27012-hf0eaf9b_1 --> 14.16.27012-hf0eaf9b_2
    
    
    
    Downloading and Extracting Packages
    
    vs2015_runtime-14.16 | 1.2 MB    |            |   0% 
    vs2015_runtime-14.16 | 1.2 MB    | 1          |   1% 
    vs2015_runtime-14.16 | 1.2 MB    | 4          |   4% 
    vs2015_runtime-14.16 | 1.2 MB    | 9          |   9% 
    vs2015_runtime-14.16 | 1.2 MB    | #6         |  16% 
    vs2015_runtime-14.16 | 1.2 MB    | ##1        |  22% 
    vs2015_runtime-14.16 | 1.2 MB    | ##9        |  30% 
    vs2015_runtime-14.16 | 1.2 MB    | ###5       |  35% 
    vs2015_runtime-14.16 | 1.2 MB    | #####2     |  53% 
    vs2015_runtime-14.16 | 1.2 MB    | #######3   |  73% 
    vs2015_runtime-14.16 | 1.2 MB    | ########## | 100% 
    
    conda-package-handli | 612 KB    |            |   0% 
    conda-package-handli | 612 KB    | 2          |   3% 
    conda-package-handli | 612 KB    | ########## | 100% 
    
    pycparser-2.20       | 92 KB     |            |   0% 
    pycparser-2.20       | 92 KB     | #7         |  17% 
    pycparser-2.20       | 92 KB     | ########## | 100% 
    
    sqlite-3.31.1        | 804 KB    |            |   0% 
    sqlite-3.31.1        | 804 KB    | 1          |   2% 
    sqlite-3.31.1        | 804 KB    | ########## | 100% 
    
    pip-20.0.2           | 1.7 MB    |            |   0% 
    pip-20.0.2           | 1.7 MB    |            |   1% 
    pip-20.0.2           | 1.7 MB    | #####1     |  51% 
    pip-20.0.2           | 1.7 MB    | ########## | 100% 
    
    idna-2.9             | 49 KB     |            |   0% 
    idna-2.9             | 49 KB     | ###2       |  32% 
    idna-2.9             | 49 KB     | ########## | 100% 
    
    conda-4.8.3          | 2.8 MB    |            |   0% 
    conda-4.8.3          | 2.8 MB    |            |   1% 
    conda-4.8.3          | 2.8 MB    | ###9       |  40% 
    conda-4.8.3          | 2.8 MB    | ######8    |  68% 
    conda-4.8.3          | 2.8 MB    | ########## | 100% 
    
    six-1.15.0           | 13 KB     |            |   0% 
    six-1.15.0           | 13 KB     | ########## | 100% 
    
    cryptography-2.9.2   | 523 KB    |            |   0% 
    cryptography-2.9.2   | 523 KB    | 3          |   3% 
    cryptography-2.9.2   | 523 KB    | ########## | 100% 
    
    zlib-1.2.11          | 113 KB    |            |   0% 
    zlib-1.2.11          | 113 KB    | #4         |  14% 
    zlib-1.2.11          | 113 KB    | ########## | 100% 
    
    tqdm-4.46.0          | 60 KB     |            |   0% 
    tqdm-4.46.0          | 60 KB     | ##6        |  27% 
    tqdm-4.46.0          | 60 KB     | ########## | 100% 
    
    certifi-2020.4.5.1   | 156 KB    |            |   0% 
    certifi-2020.4.5.1   | 156 KB    | #          |  10% 
    certifi-2020.4.5.1   | 156 KB    | ########## | 100% 
    
    openssl-1.1.1g       | 4.8 MB    |            |   0% 
    openssl-1.1.1g       | 4.8 MB    |            |   0% 
    openssl-1.1.1g       | 4.8 MB    | ##3        |  23% 
    openssl-1.1.1g       | 4.8 MB    | ####       |  40% 
    openssl-1.1.1g       | 4.8 MB    | #####9     |  60% 
    openssl-1.1.1g       | 4.8 MB    | ########3  |  83% 
    openssl-1.1.1g       | 4.8 MB    | #########4 |  95% 
    openssl-1.1.1g       | 4.8 MB    | ########## | 100% 
    
    setuptools-47.1.1    | 538 KB    |            |   0% 
    setuptools-47.1.1    | 538 KB    | 2          |   3% 
    setuptools-47.1.1    | 538 KB    | ########## | 100% 
    
    requests-2.23.0      | 93 KB     |            |   0% 
    requests-2.23.0      | 93 KB     | #7         |  17% 
    requests-2.23.0      | 93 KB     | ########## | 100% 
    Preparing transaction: ...working... done
    Verifying transaction: ...working... done
    Executing transaction: ...working... done
    Collecting package metadata (current_repodata.json): ...working... done
    Solving environment: ...working... done
    
    ## Package Plan ##
    
      environment location: C:\Users\LUOZHI~1\AppData\Local\R-MINI~1\envs\r-reticulate
    
      added / updated specs:
        - numpy
        - python=3.6
    
    
    The following packages will be downloaded:
    
        package                    |            build
        ---------------------------|-----------------
        certifi-2020.4.5.2         |   py36h9f0ad1d_0         153 KB  conda-forge
        intel-openmp-2020.0        |              166         1.5 MB
        libblas-3.8.0              |           15_mkl         3.5 MB  conda-forge
        libcblas-3.8.0             |           15_mkl         3.5 MB  conda-forge
        liblapack-3.8.0            |           15_mkl         3.5 MB  conda-forge
        mkl-2020.0                 |              166        98.9 MB
        numpy-1.18.5               |   py36h4d86e3b_0         4.8 MB  conda-forge
        pip-20.1.1                 |             py_1         1.1 MB  conda-forge
        python-3.6.10              |he025d50_1009_cpython        20.7 MB  conda-forge
        python_abi-3.6             |          1_cp36m           4 KB  conda-forge
        setuptools-47.1.1          |   py36h9f0ad1d_0         678 KB  conda-forge
        vc-14.1                    |       h869be7e_1           6 KB  conda-forge
        vs2015_runtime-14.16.27012 |       h30e32a0_2         2.2 MB  conda-forge
        wheel-0.34.2               |             py_1          24 KB  conda-forge
        wincertstore-0.2           |        py36_1003          13 KB  conda-forge
        ------------------------------------------------------------
                                               Total:       140.7 MB
    
    The following NEW packages will be INSTALLED:
    
      certifi            conda-forge/win-64::certifi-2020.4.5.2-py36h9f0ad1d_0
      intel-openmp       pkgs/main/win-64::intel-openmp-2020.0-166
      libblas            conda-forge/win-64::libblas-3.8.0-15_mkl
      libcblas           conda-forge/win-64::libcblas-3.8.0-15_mkl
      liblapack          conda-forge/win-64::liblapack-3.8.0-15_mkl
      mkl                pkgs/main/win-64::mkl-2020.0-166
      numpy              conda-forge/win-64::numpy-1.18.5-py36h4d86e3b_0
      pip                conda-forge/noarch::pip-20.1.1-py_1
      python             conda-forge/win-64::python-3.6.10-he025d50_1009_cpython
      python_abi         conda-forge/win-64::python_abi-3.6-1_cp36m
      setuptools         conda-forge/win-64::setuptools-47.1.1-py36h9f0ad1d_0
      vc                 conda-forge/win-64::vc-14.1-h869be7e_1
      vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
      wheel              conda-forge/noarch::wheel-0.34.2-py_1
      wincertstore       conda-forge/win-64::wincertstore-0.2-py36_1003
    
    
    
    Downloading and Extracting Packages
    
    python-3.6.10        | 20.7 MB   |            |   0% 
    python-3.6.10        | 20.7 MB   |            |   0% 
    python-3.6.10        | 20.7 MB   |            |   0% 
    python-3.6.10        | 20.7 MB   |            |   1% 
    python-3.6.10        | 20.7 MB   |            |   1% 
    python-3.6.10        | 20.7 MB   | 1          |   1% 
    python-3.6.10        | 20.7 MB   | 1          |   2% 
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    python-3.6.10        | 20.7 MB   | 3          |   3% 
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    python-3.6.10        | 20.7 MB   | 6          |   6% 
    python-3.6.10        | 20.7 MB   | 8          |   9% 
    python-3.6.10        | 20.7 MB   | #2         |  13% 
    python-3.6.10        | 20.7 MB   | #8         |  18% 
    python-3.6.10        | 20.7 MB   | ##3        |  24% 
    python-3.6.10        | 20.7 MB   | ##7        |  28% 
    python-3.6.10        | 20.7 MB   | ###        |  31% 
    python-3.6.10        | 20.7 MB   | ###4       |  34% 
    python-3.6.10        | 20.7 MB   | ###9       |  40% 
    python-3.6.10        | 20.7 MB   | ####3      |  43% 
    python-3.6.10        | 20.7 MB   | ####8      |  49% 
    python-3.6.10        | 20.7 MB   | ######2    |  62% 
    python-3.6.10        | 20.7 MB   | ######8    |  69% 
    python-3.6.10        | 20.7 MB   | #######4   |  75% 
    python-3.6.10        | 20.7 MB   | ########   |  81% 
    python-3.6.10        | 20.7 MB   | ########6  |  87% 
    python-3.6.10        | 20.7 MB   | #########2 |  92% 
    python-3.6.10        | 20.7 MB   | #########7 |  98% 
    python-3.6.10        | 20.7 MB   | ########## | 100% 
    
    wincertstore-0.2     | 13 KB     |            |   0% 
    wincertstore-0.2     | 13 KB     | ########## | 100% 
    
    setuptools-47.1.1    | 678 KB    |            |   0% 
    setuptools-47.1.1    | 678 KB    | 2          |   2% 
    setuptools-47.1.1    | 678 KB    | ########## | 100% 
    
    numpy-1.18.5         | 4.8 MB    |            |   0% 
    numpy-1.18.5         | 4.8 MB    |            |   0% 
    numpy-1.18.5         | 4.8 MB    | ##3        |  23% 
    numpy-1.18.5         | 4.8 MB    | ####6      |  46% 
    numpy-1.18.5         | 4.8 MB    | #######    |  70% 
    numpy-1.18.5         | 4.8 MB    | #########3 |  93% 
    numpy-1.18.5         | 4.8 MB    | ########## | 100% 
    
    vs2015_runtime-14.16 | 2.2 MB    |            |   0% 
    vs2015_runtime-14.16 | 2.2 MB    |            |   1% 
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    vs2015_runtime-14.16 | 2.2 MB    | ########## | 100% 
    
    liblapack-3.8.0      | 3.5 MB    |            |   0% 
    liblapack-3.8.0      | 3.5 MB    |            |   0% 
    liblapack-3.8.0      | 3.5 MB    | ###1       |  32% 
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    liblapack-3.8.0      | 3.5 MB    | #########4 |  95% 
    liblapack-3.8.0      | 3.5 MB    | ########## | 100% 
    
    wheel-0.34.2         | 24 KB     |            |   0% 
    wheel-0.34.2         | 24 KB     | ######7    |  68% 
    wheel-0.34.2         | 24 KB     | ########## | 100% 
    
    vc-14.1              | 6 KB      |            |   0% 
    vc-14.1              | 6 KB      | ########## | 100% 
    
    python_abi-3.6       | 4 KB      |            |   0% 
    python_abi-3.6       | 4 KB      | ########## | 100% 
    
    mkl-2020.0           | 98.9 MB   |            |   0% 
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    mkl-2020.0           | 98.9 MB   |            |   1% 
    mkl-2020.0           | 98.9 MB   | 1          |   1% 
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    mkl-2020.0           | 98.9 MB   | 5          |   5% 
    mkl-2020.0           | 98.9 MB   | 7          |   7% 
    mkl-2020.0           | 98.9 MB   | #          |  11% 
    mkl-2020.0           | 98.9 MB   | #2         |  12% 
    mkl-2020.0           | 98.9 MB   | #3         |  14% 
    mkl-2020.0           | 98.9 MB   | #5         |  15% 
    mkl-2020.0           | 98.9 MB   | #6         |  16% 
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    mkl-2020.0           | 98.9 MB   | #8         |  19% 
    mkl-2020.0           | 98.9 MB   | #9         |  20% 
    mkl-2020.0           | 98.9 MB   | ##1        |  21% 
    mkl-2020.0           | 98.9 MB   | ##2        |  22% 
    mkl-2020.0           | 98.9 MB   | ##3        |  23% 
    mkl-2020.0           | 98.9 MB   | ##4        |  24% 
    mkl-2020.0           | 98.9 MB   | ##5        |  26% 
    mkl-2020.0           | 98.9 MB   | ##6        |  27% 
    mkl-2020.0           | 98.9 MB   | ##7        |  28% 
    mkl-2020.0           | 98.9 MB   | ##8        |  29% 
    mkl-2020.0           | 98.9 MB   | ###        |  30% 
    mkl-2020.0           | 98.9 MB   | ###1       |  31% 
    mkl-2020.0           | 98.9 MB   | ###2       |  32% 
    mkl-2020.0           | 98.9 MB   | ###3       |  33% 
    mkl-2020.0           | 98.9 MB   | ###4       |  35% 
    mkl-2020.0           | 98.9 MB   | ###5       |  36% 
    mkl-2020.0           | 98.9 MB   | ###6       |  37% 
    mkl-2020.0           | 98.9 MB   | ###7       |  38% 
    mkl-2020.0           | 98.9 MB   | ###9       |  39% 
    mkl-2020.0           | 98.9 MB   | ####       |  40% 
    mkl-2020.0           | 98.9 MB   | ####1      |  41% 
    mkl-2020.0           | 98.9 MB   | ####2      |  42% 
    mkl-2020.0           | 98.9 MB   | ####3      |  44% 
    mkl-2020.0           | 98.9 MB   | ####4      |  45% 
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    mkl-2020.0           | 98.9 MB   | #####      |  50% 
    mkl-2020.0           | 98.9 MB   | #####1     |  52% 
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    mkl-2020.0           | 98.9 MB   | #####9     |  59% 
    mkl-2020.0           | 98.9 MB   | ######     |  60% 
    mkl-2020.0           | 98.9 MB   | ######1    |  62% 
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    mkl-2020.0           | 98.9 MB   | #######    |  71% 
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    mkl-2020.0           | 98.9 MB   | #######2   |  73% 
    mkl-2020.0           | 98.9 MB   | #######3   |  74% 
    mkl-2020.0           | 98.9 MB   | #######5   |  75% 
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    mkl-2020.0           | 98.9 MB   | #######9   |  80% 
    mkl-2020.0           | 98.9 MB   | ########   |  81% 
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    mkl-2020.0           | 98.9 MB   | #########9 | 100% 
    mkl-2020.0           | 98.9 MB   | ########## | 100% 
    
    pip-20.1.1           | 1.1 MB    |            |   0% 
    pip-20.1.1           | 1.1 MB    | 1          |   1% 
    pip-20.1.1           | 1.1 MB    | ########## | 100% 
    
    intel-openmp-2020.0  | 1.5 MB    |            |   0% 
    intel-openmp-2020.0  | 1.5 MB    | 1          |   1% 
    intel-openmp-2020.0  | 1.5 MB    | #######4   |  74% 
    intel-openmp-2020.0  | 1.5 MB    | ########## | 100% 
    
    libblas-3.8.0        | 3.5 MB    |            |   0% 
    libblas-3.8.0        | 3.5 MB    |            |   0% 
    libblas-3.8.0        | 3.5 MB    | ###2       |  33% 
    libblas-3.8.0        | 3.5 MB    | ######4    |  64% 
    libblas-3.8.0        | 3.5 MB    | #########6 |  96% 
    libblas-3.8.0        | 3.5 MB    | ########## | 100% 
    
    libcblas-3.8.0       | 3.5 MB    |            |   0% 
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    libcblas-3.8.0       | 3.5 MB    | ###2       |  32% 
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    libcblas-3.8.0       | 3.5 MB    | #########4 |  95% 
    libcblas-3.8.0       | 3.5 MB    | ########## | 100% 
    
    certifi-2020.4.5.2   | 153 KB    |            |   0% 
    certifi-2020.4.5.2   | 153 KB    | #          |  10% 
    certifi-2020.4.5.2   | 153 KB    | ########## | 100% 
    Preparing transaction: ...working... done
    Verifying transaction: ...working... done
    Executing transaction: ...working... done
    #
    # To activate this environment, use
    #
    #     $ conda activate r-reticulate
    #
    # To deactivate an active environment, use
    #
    #     $ conda deactivate
    
    * Miniconda has been successfully installed at "C:/Users/luozhixin/AppData/Local/r-miniconda".
    
    捕获.PNG

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