library(dplyr)
数据集相关性
library(dplyr);library(tidyverse)
p_value <- corrplot::cor.mtest(bind_cols(df1,df2), conf.level = 0.95)
p_value <- p_value$p %>% data.frame() %>% rownames_to_column("rowname") %>% gather("var", "p", -rowname)
cor_matrix <- corrr::correlate(bind_cols(df1,df2),method = "spearman") %>%
tidyr::pivot_longer(cols=-term,names_to="var",values_to = 'value') %>%
data.frame() %>%
dplyr::rename(rowname=term)
cor_pval_matrix <- plyr::join(cor_matrix,p_value)
cor_matrix <- cor_pval_matrix %>%
# mutate(value = ifelse(p > 0.05, NA_integer_, value)) %>%
select(-p) %>%
spread(var, value) %>%
filter(rowname %in% colnames(df1)) %>%
select_if(names(.) %in% c("rowname",colnames(df2))) %>% data.frame() %>%
column_to_rownames("rowname") %>% as.matrix()
pval_matrix <- cor_pval_matrix %>%
# mutate(value = ifelse(p > 0.05, NA_integer_, value)) %>%
select(-value) %>%
spread(var, p) %>%
filter(rowname %in% colnames(df1)) %>%
select_if(names(.) %in% c("rowname",colnames(df2))) %>% data.frame() %>%
column_to_rownames("rowname") %>% as.matrix()
COL1 <- colorRampPalette(c("#053061","#2166AC","#4393C3","#92C5DE","#D1E5F0","#FFFFFF","#FDDBC7","#F4A582","#D6604D","#B2182B","#67001F"))
corrplot::corrplot(cor_matrix,
p.mat = pval_matrix,
# order = 'hclust',
# hclust.method = "complete",
type = 'full',
method = 'color',
is.corr=FALSE,
col = COL1(200),
cl.pos = "n",
col.lim = c(min(cor_matrix),max(cor_matrix)),
sig.level = c(0.001, 0.01, 0.05),pch.cex = 0.9,insig = 'label_sig',pch.col = 'grey20',diag = T,
tl.col = "black")
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