在用fastqc时,发现了这个问题
$ fastqc -t 8 mianhuang-a-1_NDSW53942_1.fq.gz mianhuang-a-1_NDSW53942_2.fq.gz
... ...
Analysis complete for mianhuang-a-1_NDSW53942_1.fq.gz
Failed to process file mianhuang-a-1_NDSW53942_1.fq.gz
java.io.FileNotFoundException: /run/media/train/7e8138cc-3bdb-4240-90b1-acc75f0808c5/Survey_data_NH/data_P101SC18102703-01-B1-21/Raw_data/mianhuang-a-1_NDSW53942/mianhuang-a-1_NDSW53942_1_fastqc.zip (Permission denied)
at java.io.FileOutputStream.open0(Native Method)
at java.io.FileOutputStream.open(FileOutputStream.java:270)
at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
at java.io.FileOutputStream.<init>(FileOutputStream.java:162)
at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:80)
at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(Offline Runner.java:178)
at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java :110)
at java.lang.Thread.run(Thread.java:748)
很好解决,是输出文件夹没有读写权限导致的的,改一下 权限即可
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