美文网首页ggplot集锦
TCGA中吸烟史定义

TCGA中吸烟史定义

作者: Angeladaddy | 来源:发表于2020-02-14 16:32 被阅读0次
    image.png
    • Lifelong Non-smoker (less than 100 cigarettes smoked in Lifetime) = 1:从未吸烟
    • Current smoker (includes daily smokers and non-daily smokers or occasional smokers) = 2:当前吸烟(包括规律吸烟者和偶尔吸烟者)
    • Current reformed smoker for > 15 years (greater than 15 years) = 3:戒烟>15年
    • Current reformed smoker for ≤15 years (less than or equal to 15 years) = 4:戒烟<15年
    • Current reformed smoker, duration not specified = 5:戒烟,戒烟时间不详
    • Smoker at Diagnosis = 6:确诊时吸烟
    • Smoking History not documented = 7:不详

    这个吸烟史无法从index的临床信息拿到,只能从patient下获取:

    cli.query <- GDCquery(project =c("TCGA-LUAD","TCGA-LUSC"),
                      file.type = "xml",
                      data.category = "Clinical") 
    GDCdownload(cli.query)
    cli <- GDCprepare_clinic(cli.query, clinical.info = "patient")
    save(cli,file="./rdata/cli.rda")
    cli$tobacco_smoking_history
    

    相关文章

      网友评论

        本文标题:TCGA中吸烟史定义

        本文链接:https://www.haomeiwen.com/subject/pvqjfhtx.html