【python编程】Biopython工具包集合

作者: leadingsci | 来源:发表于2017-12-24 19:27 被阅读487次
    Biopython

    Biopython 官网

    http://biopython.org/

    Biopython 最新英文教程-2017-10月版

    http://biopython.org/DIST/docs/tutorial/Tutorial.html

    Biopython 最新英文教程 PDF 下载

    http://biopython.org/DIST/docs/tutorial/Tutorial.pdf

    官方Biopython Github

    https://github.com/biopython/biopython


    Biopython 中文教程-2013年-5月版

    Biopython-cn 0.1 文档

    http://biopython-cn.readthedocs.io/zh_CN/latest/

    Biopython 中文教程 PDF 下载

    翻译来源:Github

    https://github.com/bigwiv/Biopython-cn


    Biopython 工具包

    Help on package Bio:
    
    NAME
        Bio - Collection of modules for dealing with biological data in Python.
    
    DESCRIPTION
        The Biopython Project is an international association of developers
        of freely available Python tools for computational molecular biology.
        
        http://biopython.org
    
    PACKAGE CONTENTS
        Affy (package)
        Align (package)
        AlignIO (package)
        Alphabet (package)
        Application (package)
        Blast (package)
        CAPS (package)
        Cluster (package)
        Compass (package)
        Crystal (package)
        Data (package)
        DocSQL
        Emboss (package)
        Entrez (package)
        ExPASy (package)
        FSSP (package)
        File
        GA (package)
        GenBank (package)
        Geo (package)
        Graphics (package)
        HMM (package)
        Index
        KDTree (package)
        KEGG (package)
        LogisticRegression
        MarkovModel
        MaxEntropy
        Medline (package)
        NMR (package)
        NaiveBayes
        NeuralNetwork (package)
        Nexus (package)
        PDB (package)
        ParserSupport
        Pathway (package)
        Phylo (package)
        PopGen (package)
        Restriction (package)
        SCOP (package)
        SVDSuperimposer (package)
        SearchIO (package)
        Seq
        SeqFeature
        SeqIO (package)
        SeqRecord
        SeqUtils (package)
        Sequencing (package)
        Statistics (package)
        SubsMat (package)
        SwissProt (package)
        TogoWS (package)
        UniGene (package)
        UniProt (package)
        Wise (package)
        _py3k (package)
        _utils
        bgzf
        codonalign (package)
        cpairwise2
        kNN
        motifs (package)
        pairwise2
        phenotype (package)
        trie
        triefind
    
    CLASSES
        builtins.Exception(builtins.BaseException)
            MissingExternalDependencyError
                MissingPythonDependencyError(MissingExternalDependencyError, builtins.ImportError)
        builtins.Warning(builtins.Exception)
            BiopythonWarning
                BiopythonDeprecationWarning
                BiopythonExperimentalWarning
                BiopythonParserWarning
        
        class BiopythonDeprecationWarning(BiopythonWarning)
         |  Biopython deprecation warning.
    
    

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