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conda环境报错: Solving environment:

conda环境报错: Solving environment:

作者: vicLeo | 来源:发表于2020-12-02 09:51 被阅读0次

    刷了机,安装好conda环境后conda又疯了。
    conda install -y samtools hisat2 bowtie2 bwa htseq bowtie
    报错开始

    Elapsed: 
    An HTTP error occurred when trying to retrieve this URL.
    HTTP errors are often intermittent, and a simple retry will get you on your way.
    ....
    Solving environment: failed with initial frozen solve. Retrying with flexible solve.
    PackagesNotFoundError: The following packages are not available from current channels:
    

    先查询当前conda版本:conda -V
    更新conda到最新版本:conda update -n base conda
    再查一下conda版本:conda -V
    然后更新一下所有:conda update --all

    还是一样的报错

    Collecting package metadata (current_repodata.json): done
    # Solving environment: failed with initial frozen solve. Retrying with flexible solve.
    # Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
    # Collecting package metadata (repodata.json): done
    # Solving environment: failed with initial frozen solve. Retrying with flexible solve.
    # Solving environment: -
    # Found conflicts! Looking for incompatible packages. 
    

    但 conda install -c conda-forge opencv=4.2.0可以被顺利执行并完成,

    查询发现是清华镜像的问题(https://www.cnblogs.com/YlnChen/p/12710893.html),立马换中科大镜像, 没删除清华镜像,把中科大的放在最前面:

     - https://mirrors.ustc.edu.cn/anaconda/cloud/bioconda/linux-64
     - https://mirrors.ustc.edu.cn/anaconda/cloud/bioconda/
    

    先少量安装尝试--最好一次放三个,一次性放太多,中间卡住就gg了
    conda install -y samtools hisat2 bowtie2
    成功!


    如果上述不行,你可以参考上述链接尝试删除清华源,或修改频道 :

    conda config --add channels conda-forge
    conda config --set channel_priority flexible
    

    或者你可以用pip来安装 https://pypi.org/ ,如:

    pip install samtools
    

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