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K-Means - 基于numpy实现程序

K-Means - 基于numpy实现程序

作者: TangCC | 来源:发表于2017-07-23 00:50 被阅读0次

    本文之编写程序涉及到API介绍,程序的完整实现,具体算法原理请查看之前所写的K-Means算法介绍

    一、基础准备

    1、python 基础

    random.uniform
    方法将随机生成下一个实数,它在[x,y]范围内。

    print(random.uniform(2,6))
    #uniform(5, 10) 的随机数为 :  6.98774810047
    #uniform(7, 14) 的随机数为 :  12.2243345905
    

    2、numpy 基础

    mat
    matrices,将数组转换成矩阵运算

    data = [[2,6],[3,6]]
    print(data)
    #>>[[2, 6], [3, 6]]
    print(np.mat(data))
    #>>[[2 6]
     [3 6]]
    
    

    二、完整程序

    # -*- coding: utf-8 -*-
    from numpy import *
    import time
    import matplotlib.pyplot as plt
    
    
    # 计算距离
    def euclDistance(vector1, vector2):
        return sqrt(sum(power(vector2 - vector1, 2)))
    
    
    # 获取初始值
    def initCentroids(dataSet, k):
        numSamples, dim = dataSet.shape
        centroids = zeros((k, dim))
        for i in range(k):
            index = int(random.uniform(0, numSamples))
            centroids[i, :] = dataSet[index, :]
        return centroids
    
    
    # 聚类
    def kmeans(dataSet, k):
        numSamples = dataSet.shape[0]
        clusterAssment = mat(zeros((numSamples, 2)))
        clusterChanged = True
    
        #获取初始聚类中心
        centroids = initCentroids(dataSet, k)
    
        # 不断迭代,指导聚类中点没有变化
        while clusterChanged:
            clusterChanged = False
            for i in range(numSamples):
                minDist = 100000.0
                minIndex = 0
                for j in range(k):
                    #计算出距离
                    distance = euclDistance(centroids[j, :], dataSet[i, :])
                    #求出最短的聚类点
                    if distance < minDist:
                        minDist = distance
                        minIndex = j
    
                # 如果该点聚类有变化,则重新赋值
                if clusterAssment[i, 0] != minIndex:
                    clusterChanged = True
                    clusterAssment[i, :] = minIndex, minDist ** 2
    
            # 更新聚类中心点
            for j in range(k):
                pointsInCluster = dataSet[nonzero(clusterAssment[:, 0].A == j)[0]]
                centroids[j, :] = mean(pointsInCluster, axis=0)
    
        print('聚类完毕')
        return centroids, clusterAssment
    
    #展示数据
    def showCluster(dataSet, k, centroids, clusterAssment):
        numSamples, dim = dataSet.shape
        if dim != 2:
            print("Sorry! I can not draw because the dimension of your data is not 2!")
            return 1
    
        mark = ['or', 'ob', 'og', 'ok', '^r', '+r', 'sr', 'dr', '<r', 'pr']
        if k > len(mark):
            print("Sorry! Your k is too large! please contact Zouxy")
            return 1
    
        # draw all samples
        for i in range(numSamples):
            markIndex = int(clusterAssment[i, 0])
            plt.plot(dataSet[i, 0], dataSet[i, 1], mark[markIndex])
    
        mark = ['Dr', 'Db', 'Dg', 'Dk', '^b', '+b', 'sb', 'db', '<b', 'pb']
        # draw the centroids
        for i in range(k):
            plt.plot(centroids[i, 0], centroids[i, 1], mark[i], markersize=12)
    
        plt.show()
    
    
    if __name__ == '__main__':
        print("加载数据")
        dataSet = []
        fileIn = open('data\\testData.txt')
        for line in fileIn.readlines():
            lineArr = line.strip().split(' ')
            dataSet.append([float(lineArr[0]), float(lineArr[1])])
    
        #转化为矩阵
        dataSet = mat(dataSet)
        k = 4
        centroids, clusterAssment = kmeans(dataSet, k)
        # 最后结果
        print(centroids)
        print("显示数据")
        showCluster(dataSet, k, centroids, clusterAssment)
    
    

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