从GEO下载数据

1. 用aspera下载

for ((x=04;x<=11;x++)); do ascp -i /home/pc/.aspera/connect/etc/asperaweb_id_dsa.openssh -k 1 -T -l 100m anonftp@ftp-private.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR581/SRR58151$x/SRR58151$x.sra ./; done;

for  ((x=0;x<=3;x++)); do fastq-dump --split-3 SRR44933$x.sra; done;

2.SRA toolkit的prefetch命令

for ((x=4;x<=9;x++)) ; do prefetch SRR634209$x -O /media/shen/disk3/jjc/2019-3-25-tongminghan/raw-data/

or

prefetch $(<SRR_Acc_List.txt) -O ./ -X 100G

head SRR_Acc_List.txt

SRR6342100

SRR6342101

SRR6342102

SRR6342104

SRR6342103

SRR6342106

SRR6342107

SRR6342108

SRR6342105

SRR6342109

3. axel -n 100 ftp://ftp.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR650/SRR6502373/SRR6502373.sra

当SRR的DATASTORE provider是sra-sos 而不是ncbi

axel -n 100 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8370179/SRR8370179.1