格式互转大全
image.png其他工具基本都是有名的存在,就不怎么介绍了,主要介绍最后面几个
bed文件转成等bin的bedgraph格式 - 简书 (jianshu.com)
其中的UCSCtools是指:USUC提供的系列工具UCSCtools
对这三种文件格式进行相互转换与处理。常用工具包括:WigTobigWig、bigWigToWig、bigWigToBedGraph、bigWigSummary、bigWigAverageOverBed、bigWigInfo等。
bedGraphToBigWig :Convert a bedGraph file to bigWig format. http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig
bigWigToBedGraph :Convert from bigWig to bedGraph format. http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph
bigWigToWig :Convert bigWig to wig. http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToWig
bigWigSummary :Extract summary information from a bigWig file. http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigSummary
bigWigAverageOverBed :Compute average score of big wig over each bed, which may have introns. http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigAverageOverBed
bigWigInfo :Print out information about bigWig file. http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigInfo
其他
生信地基系列--生物信息学参考基因组,格式和起始位置 - 简书 (jianshu.com)
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