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blat下载和安装

blat下载和安装

作者: TheMoonAsaKite | 来源:发表于2021-09-23 19:48 被阅读0次
    wget https://users.soe.ucsc.edu/~kent/src/blatSrc35.zip
    unzip blatSrc35.zip
    cd blatSrc/
    uname -a
    export MACHTYPE=x86_64
    mkdir -p ~/bin/x86_64
    make
    

    make报错了

    make[1]: Entering directory `/home/micro/software/blatSrc/lib'
    gcc -O -g  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64   -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pngwrite.o -c pngwrite.c
    pngwrite.c:7:87: fatal error: png.h: No such file or directory
     #include "png.h"   // MUST come before common.h, due to setjmp checking  in pngconf.h 
                                                                                           ^
    compilation terminated.
    make[1]: *** [pngwrite.o] Error 1
    make[1]: Leaving directory `/home/micro/software/blatSrc/lib'
    make: *** [all] Error 2
    

    看来时缺依赖
    yum install libpng #我是centos系统
    安装不了这个包,,非常幸运找到这个网站,告诉我blat安装的依赖
    http://genome.ucsc.edu/goldenPath/help/mirrorManual.html#software-requirements
    显示:

    Debian/Ubuntu: apt-get install ghostscript apache2 mysql-server gmt r-base uuid-dev python-mysqldb
    Redhat/Fedora/CentOS: yum install libpng12 httpd ghostscript GMT hdf5 R libuuid-devel MySQL-python
    

    所以直接安装:
    yum install libpng12
    安装成功!
    最后输入make安装成功

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